Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00368 ATGGCGCCTAGTACGATCCGGAAAGCGGTCGGAGCTCTGAAGGATCAGACGAGTATTGGAATTGCGAAGGTTGCGAGTAATATGGCGCCGGACCTTGAGGTGGCGATTGTGAAGGCGACGAGTCATGATGATGATCCGGCGAGTGAGAAGTACATCAGGGAGATTTTGAGCTTGACATCTTATTCTCGTGGATATGTGAGTGCGTGTGTTTCGGCGATTTCGAAGCGTTTGGCTAAGACGAGGGATTGGATTGTGGCGCTTAAGGCACTCATACTTGTGCATAGGTTGTTGAATGAAGGGGACCCGGTGTTTCAGGAGGAGATCTTGTATGCTACTAGAAGGGGTACGAGGCTGTTGAATATGTCTGATTTTAAGGATGAAGCTCATTCGAGCTCGTGGGATCACTCGGCTTTTGTTCGAACTTATGCATTCTACTTGGATCAACGGCTGGAATTGATGTTGTTTGAGAAGAAAGGTGGTAGTGCAAGGGGAAATCCCCGTGGGGATGATAGATTTGATGGAAGAGATGACTTTAGATCTCCGCCCCCGAGGCCTTACGATAACGGTTATGGCGAGTTTAGGGGAGAAAGAGAGTATGGAAACTATGGTGGAATGAGGAGGTCTAGATCTTATGGTGATGTGGGTGAGTCTACGGGCAGGGACGGGCAGGGGCAGGGGCAGGGGCGTAACAACAAGGGGCCTGTGACTCCGTTGAGGGAAATGACGATCGAGAGAGTTTTTGGGAAGATGGGACATTTGCAGAGACTGTTGGATAGATTCTTGTCGTGTCGACCAACTGGGTTGGCGAAGAATAGTAGGATGATTTTGTATGCTTTGTACCCTCTAGTGAGGGAAAGTTTTCAATTGTATGCAGATATTTGTGAGGTTTTGGCTGTTTTGCTTGACAAATTCTTTGATATGGAGTATTCTGACTGTATGAAGGCATTTGATGCTTATGGTAGCGCGGCCAAGCAGATTGATGAGCTAATTGTATTTTATAATTGGTGTAAAGAAACAGGCGTTGCTAGATCCTCTGAGTATCCCGAGGTGCAGAGAATCACCAGCAAGTTACTCGAAACATTGGAGGAGTTTTTGAGGGAAAGAGGGAAGAGGCCAAAGAGTCCGGAGAGAGAGCCACCTCCGCCTGCGCCTGAAGAGGAAGAAACGGCACCTGATATGAATGAGATTAAAGCTCTTCCTCCACCTGAAAATTACACTCCACCTCCGCCTGAGCCCGAGCCCCAGCCTGCACTCAAACCTCAACCGCAAGTCACGGACGACTTGGTCAATCTGAGAGACGATGCAGTTAGTGCAGATGATCAAGGTAATAAACTGGCATTGGCTCTGTTTGCTGGTCCAGCAGCTAATGGTGCAAACGGATCCTGGGAAGCTTTCCCTTCCGATGGACAGCCAGAAGTAACCTCTGCTTGGCAGACCCCGGCTGCTGAACCTGGCAAAGCCGATTGGGAGTTAGCTTTGGTTGAGACAGCAAGCAATTTATCAAGGCAGAAAGCAGCACTCGGTGGTGGACTCGACCCATTGTTGTTAAATGGCATGTATGATCAAGGAATGGTTAGGCAGCACACTAGCACTGCACAGCTGAGCGGTGGAAGTGCAAGCAGTGTAGCTTTGCCCGGCCCCGGAAACAGCAAAACTCCTGTACTGGCTCTTCCAGCTCCGGATGGAACTGTCCAGGCAGTGAATCAGGATCCTTTTGCAGCATCGTTAAGCGTTCCACCTCCTTCTTATGTGCAAATGGTGGAGATGGAGAAGAAACAGCATCTCCTCATGCAGGAACAGCAGTTATGGCAGCAGTATGCAAGAGATGGGATGCAAGGGCAGAGCAGTTTGAACAAAATCAGTAACCCCCCTGGTTACTACAACATGGGCGCGGCACCAATGGCTCCGATGCCCTACGGAATGCCTCCAATGAACGGAATGGGCGGGGTTGTTAGTGAAGTTCATTGTTGTGCTACTAAGAAGAATAAGGAGTGGCAAGAGAAGCTCCCCATTGTCGTCCTTAAAGCTGAGGAGATTTTGTATTCTAAAGCTGACTCTGAGGTTGAATACATGGATGTTACTACACTATGGACCCGTATAAATGAAGCGATTAATACGATAATTCGGCTTGATAAGGATGCTGAAACTGGGGAATTTCTTCATCCTTGTATTGAAGCTGCTCTCTATTTGGGTTGCACACCGAGAAGATCGTCGAAGAGTAACCGAGGTAGTAATCTGAGGGGCTACCTTAATTCTTGTAGTCCACCGGTCTTAGATACATCACCCAACTTCACCAACACCATTAGACCAACTGTTTTGAGTTCACAACATTTATCACATTGTCCAAATTTGTCAAAGCAGACGAGAAATGTACCGAAATCCCGAATGGAAAACCAAAAACATGTTGGTGTTCCTAGCACAAACCTGACTTCGACTGTATATAAGAATATCTGTCCATCGATTCGTAACAGACAATTCCTAAAAGAGAATGTTGCTGGATGGGACATGTTTTCTTTGTGTCCATTGTATCAACACGTTCGTGATATCGAAATCCAACCAAATCCAGTCTACAACAATCCGAGTTTCTTTGATCCAGCTCCATTCAAGTACTTCCATTCCAATGATGTGATTCCTGCAAGAAACAACATAGCTGATTTGGTAAATAGTACTACTCTTCACAAGCAACAAAAAACAACTTGTGATCTATCGTTGCGGTTGGGCTCTCTCTTTGTTCCACACCCGAGCATCAACGACAATCAATCCAATACGATCAACAACATCAATGCTAACACATCTCAAAATCAGATCACGAGTTCGTCTGATCGCTCATTTCAACTAGACAAAACGTTCCCTTTCTTCCCTCTCCATGGTACATATGATGCATTAGATTTCCATTAG 2898 46.62 MAPSTIRKAVGALKDQTSIGIAKVASNMAPDLEVAIVKATSHDDDPASEKYIREILSLTSYSRGYVSACVSAISKRLAKTRDWIVALKALILVHRLLNEGDPVFQEEILYATRRGTRLLNMSDFKDEAHSSSWDHSAFVRTYAFYLDQRLELMLFEKKGGSARGNPRGDDRFDGRDDFRSPPPRPYDNGYGEFRGEREYGNYGGMRRSRSYGDVGESTGRDGQGQGQGRNNKGPVTPLREMTIERVFGKMGHLQRLLDRFLSCRPTGLAKNSRMILYALYPLVRESFQLYADICEVLAVLLDKFFDMEYSDCMKAFDAYGSAAKQIDELIVFYNWCKETGVARSSEYPEVQRITSKLLETLEEFLRERGKRPKSPEREPPPPAPEEEETAPDMNEIKALPPPENYTPPPPEPEPQPALKPQPQVTDDLVNLRDDAVSADDQGNKLALALFAGPAANGANGSWEAFPSDGQPEVTSAWQTPAAEPGKADWELALVETASNLSRQKAALGGGLDPLLLNGMYDQGMVRQHTSTAQLSGGSASSVALPGPGNSKTPVLALPAPDGTVQAVNQDPFAASLSVPPPSYVQMVEMEKKQHLLMQEQQLWQQYARDGMQGQSSLNKISNPPGYYNMGAAPMAPMPYGMPPMNGMGGVVSEVHCCATKKNKEWQEKLPIVVLKAEEILYSKADSEVEYMDVTTLWTRINEAINTIIRLDKDAETGEFLHPCIEAALYLGCTPRRSSKSNRGSNLRGYLNSCSPPVLDTSPNFTNTIRPTVLSSQHLSHCPNLSKQTRNVPKSRMENQKHVGVPSTNLTSTVYKNICPSIRNRQFLKENVAGWDMFSLCPLYQHVRDIEIQPNPVYNNPSFFDPAPFKYFHSNDVIPARNNIADLVNSTTLHKQQKTTCDLSLRLGSLFVPHPSINDNQSNTINNINANTSQNQITSSSDRSFQLDKTFPFFPLHGTYDALDFH* 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3258729 3267280 - Chy4G070860.1 Chy04g00368 224267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00368 965 MobiDBLite consensus disorder prediction 401 419 - -
Chy04g00368 965 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 631 IPR045192 GO:0048268|GO:0072583
Chy04g00368 965 MobiDBLite consensus disorder prediction 365 422 - -
Chy04g00368 965 Gene3D - 2 155 IPR008942 -
Chy04g00368 965 MobiDBLite consensus disorder prediction 161 235 - -
Chy04g00368 965 Gene3D ANTH domain 229 374 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Chy04g00368 965 Pfam ANTH domain 31 367 IPR011417 GO:0005543
Chy04g00368 965 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Chy04g00368 965 MobiDBLite consensus disorder prediction 365 384 - -
Chy04g00368 965 SMART enth_2 30 160 IPR013809 -
Chy04g00368 965 MobiDBLite consensus disorder prediction 528 554 - -
Chy04g00368 965 SUPERFAMILY GAT-like domain 237 367 - -
Chy04g00368 965 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Chy04g00368 965 MobiDBLite consensus disorder prediction 528 547 - -
Chy04g00368 965 CDD ANTH_N_AP180_plant 32 152 - -
Chy04g00368 965 MobiDBLite consensus disorder prediction 161 182 - -
Chy04g00368 965 PANTHER - 5 631 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00368 - - - csv:101207892 1091.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy03g01116 Chy04g00368 CCT
Chy03g01116 Chy04g00368 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00288 Chy-Chr1:2015578 Chy04g00368 Chy-Chr4:3258729 1.19E-159 transposed
Chy02g02043 Chy-Chr2:24608285 Chy04g00368 Chy-Chr4:3258729 6.85E-22 transposed
Chy03g01340 Chy-Chr3:16370642 Chy04g00368 Chy-Chr4:3258729 5.43E-10 transposed
Chy05g00515 Chy-Chr5:5595846 Chy04g00368 Chy-Chr4:3258729 1.89E-34 transposed
Chy05g00872 Chy-Chr5:12839316 Chy04g00368 Chy-Chr4:3258729 5.88E-24 transposed
Chy07g00884 Chy-Chr7:12266552 Chy04g00368 Chy-Chr4:3258729 8.47E-16 transposed
Chy09g00806 Chy-Chr9:10781265 Chy04g00368 Chy-Chr4:3258729 7.11E-12 transposed
Chy10g00081 Chy-Chr10:1983167 Chy04g00368 Chy-Chr4:3258729 1.57E-07 transposed
Chy10g00237 Chy-Chr10:6029018 Chy04g00368 Chy-Chr4:3258729 4.34E-23 transposed
Chy03g01114 Chy-Chr3:14477559 Chy04g00368 Chy-Chr4:3258729 9.59E-40 wgd
Chy04g00368 Chy-Chr4:3258729 Chy05g01300 Chy-Chr5:17230120 8.04E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g487 . . . . . . . . Cmo05g00381 Cmo12g00290 Cma01g01505 Cma05g00380 . Car12g00322 Sed03g1615 Cpe07g00299 . Bhi04g00945 Tan02g2728 Cmetu03g0290 . Hepe10g0246 . Lcy13g1794 Cla05g01736 Cam05g1850 . Cco05g1922 Clacu05g1838 Cmu05g1721 Cre05g1852 . . Cone17ag1018 Cone20ag0672 Lsi04g02127 Csa03g04334 Chy04g00368 Cme03g01611 Blo17g00019 Blo18g00023 . Bda13g01260 . . . Bma02g00023 Sed13g2022 . . . Cma12g00341 . Car05g00323 Cpe11g00325 Cpe02g00450 Bhi09g02236 Tan01g3645 Cmetu04g1471 . Hepe01g2020 . . Cla08g01338 Cam08g1800 Cec08g1379 Cco08g1507 Clacu08g1494 . Cre08g1281 Lsi08g01209 . Chy03g01116 Cme04g00410
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001058 4 2 5 5 5 2 0 2 2 1 2 2 2 2 2 3 2 3 3 2 1 3 3 3 4 4 2 5 4 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00368 Chy_Chr04 FPKM 33.310318 39.672977 33.628185 33.988487 27.792496 30.4298 28.759602 50.277199 50.758816 46.921066