Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00372 ATGGCTGTCGACGGCGTTTGTGCAATTGACGTTGTTGACTTTCCTCCCCTCCAGTCAACGACGACGTCCGAGAAACATCGTCGATCCTTCTCCTTGCTTTCATCTCCTTTGATGATTGTTGGCCTCTCCAGGAAGAATGTTTTGTATCGCCAGATTCCTCATCAGCCTCTCATGCTCTCTGTTCTTAAATTGGACGGCTCTTCTTTCGATATTCAAGTTAGGAGATCGGCTACTGTTGCTGAATTGAAGGGGGCCGTGGAGTTGGTCTTCAGTCACATGCCACAGCACGGACCGGGAAAGATTTCATGGCTCCATGTGTGGTGGCATTTCTGCTTATGCTATGCTGGTCAAAAGTTAGTTGACGATGCTGACTACATTGCAACTTTTGGCATTAAGGACGGTGATCAGCTCCAATTTGTCCGGCATGTCACAACTGGCTACAATGTTATAAGAAAGCAATCAAAGAAACGTGTGGTTTCCTCAAAACTGATGAGTAGGATATCATCTCGATCAAAAATCTTCAAGCAAAATGATCAAAAAGATATGGAAAGATACAACTACAACGACATAGAAAGCGGAAGGTGTCAACATAATGGCAACAATGATCTCTTCCTTAACCATGAGCCAAAGATGGTAGTGTTTTTAGGAGGATGGTTCTCTCACACCAAGCTAGCATCCACAGGAAAGATGAGCATCAAGAGCCTGGTACGTCCATCAGTAATTCGCCCTAGCCTAGTGCATGGTTTCAAGAATTTAATACAATTATGCCGCGAAAAACGACATTATGAAAAAGTGAATAAAAAGAAGAGATCCATCATAGGAGTTTGA 828 43.48 MAVDGVCAIDVVDFPPLQSTTTSEKHRRSFSLLSSPLMIVGLSRKNVLYRQIPHQPLMLSVLKLDGSSFDIQVRRSATVAELKGAVELVFSHMPQHGPGKISWLHVWWHFCLCYAGQKLVDDADYIATFGIKDGDQLQFVRHVTTGYNVIRKQSKKRVVSSKLMSRISSRSKIFKQNDQKDMERYNYNDIESGRCQHNGNNDLFLNHEPKMVVFLGGWFSHTKLASTGKMSIKSLVRPSVIRPSLVHGFKNLIQLCREKRHYEKVNKKKRSIIGV* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3291131 3293671 + Chy4G070900.1 Chy04g00372 224271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00372 275 Pfam Ubiquitin-like domain 59 143 IPR040610 -
Chy04g00372 275 SUPERFAMILY Ubiquitin-like 53 146 IPR029071 -
Chy04g00372 275 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 19 266 - -
Chy04g00372 275 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 19 266 IPR039690 GO:0000398|GO:0005689
Chy04g00372 275 CDD Ubl_SNRNP25 57 142 IPR040610 -
Chy04g00372 275 Gene3D - 53 148 - -
Chy04g00372 275 ProSiteProfiles Ubiquitin domain profile. 57 146 IPR000626 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00372 - - - csv:101219460 517.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00372 Chy-Chr4:3291131 Chy07g00365 Chy-Chr7:2959623 3.92E-16 dispersed
Chy07g01567 Chy-Chr7:19902077 Chy04g00372 Chy-Chr4:3291131 4.19E-32 transposed
Chy02g02031 Chy-Chr2:24337954 Chy04g00372 Chy-Chr4:3291131 8.85E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g493 . . . . . . . . . . Cma01g01506 . Car09g00397 . . . Cpe06g00334 . . . . . . . Cla05g01733 Cam05g1846 Cec05g1858 Cco05g1918 Clacu05g1834 Cmu05g1717 Cre05g1848 Cone4ag1781 . . . . Csa03g04329 Chy04g00372 . . . . . . . . . Sed13g2019 . Cmo09g00460 . . . . . Cpe02g00448 Bhi09g02232 Tan01g3635 Cmetu04g2649 . Hepe01g2015 Mch11g0551 . . . . . . . . . . . Cme04g00414
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013027 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00372 Chy_Chr04 FPKM 79.938667 90.763016 28.338856 28.697578 14.690252 16.204805 14.959868 23.866682 23.165119 23.730787