Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00374 ATGGCGGACGACGATTACAATGACCTTGACATGGGATATGAGGATGAGCCACAAGAACCCGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATACTAACACTGATGATGTTCCTGGTGAACCCGTTGAAGCAGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACTAAGTATGAACGTGCTAGAATTTTGGGTACACGCGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGCTACTTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAACTGATTGTGGAGGACTCTTGGAAGAGGCAAAGGTCATCTCTGAGGTTCAGTAGGAATCGGACAAATTTTTTTTATAGCACAAATCAGAAGAGAAGATCTCATCCCCTGAAGGTTGTCCAGTCAGTCCTGAATAACTGCAAGTCAAATTTAAACGACAATGGAGCAAATGAAGAAGCAAAACTGCTTCTGGAGAGATTGTATGCTCAAACACAGAGATTGGAAGAACATGTAAGCAAAGATCCTCACTTCCCACAAGATGTATGGCTAGGGCTCAGTCTTGAAAATTTCGAGTCTGATCTCCAGGCTGCATTGGCAGTATTGAAAAAGAAAGAAGAAGATCTACAAGATGCAGAAAGAACGATTCTACTAGAACGAAGTCAATTAAACAATGCGAGGGAGAAGTTGGAGAAGCAGGAGGAAGAAATTACTGTTGCTTATCGTAAACAGCAAGAATTAGAAGATGAGCTTAAAGAGGCAAATCTAAACTTAGCTTCTCAAGCTAGACTGATTGACGAATTAAAACTTCAAATTAGGGAGAAAGACGAGGGGATTGCTGCAGTTGAGTCTGCCCTTGCTTTGAAAGAAGATGAGTTGAAGAGAATGAGAGCTGATTTGGCTATGAAGAGTGAAGAAGCTTTCAAGACAAACTGTGAACTTAAATCTAAGTCCCAGCTTCTGACGGAAGCCAACGAAGTCGTGAAAAGACAAGAAGTTGAGCTACAAATGCTTAAAAGGACTGTGGTGGAGAAAGAAAAAGAACTTGAACTTTCTGTAAAGCTGCAAAAACTTGAAGTGGAGAGACTGGAAGTTGTAGAGAAAAATTTGGAGAAGAGGACCATGGAATGGTTGTTAGCACAGGAGGAATTGAAGAAAACGAGAAAGGAGGCATCTAAGAAAACAGTAGAGATGAATAAAACCGTGAACGACTTAAACCGAGTAAAGAAGCTTCTCGCCGATGTAAAAAGTGAGTTGGTTTCCTCTCAAAAGTCTCTTGTGTCCTCCAGAAAGAAAATTGAAGAACAAGAAGATATTCTTGAGAGGCAAATGGCAGAACTTGAAGAACAAAATAAGGGTATCAATGCATATATGTCGAGTTTAAAAGATGCTCAAATCGAAGTAGAGAGTGAAAGAGTAAAGCTTAGATTCGTAGAGGCCCATAACAAGGAGCTCGAGGGTGATTTGGTGAAGGAAAAGGAGCTCACTGATGAGCTACAGCAACAACTGAAGAGAGAGAAATCCTATCTCCAGCAGGCAACTGAGGAGAAATCACTTCTACAGAACGAGCTAGAGCATAAACGTATCGAGTTCGAGAAAACTCACAAACTCCTTCAAGACAAAGCGTCGGAGTTGGTCGAGGCCAAGTTAGAAATCCAGCATTTGAAATCCAAACAGGTTTCTCTTCAACTTCTTCTAGAGGAGAAAGACTTGGAAATACTTGATGCACAAAAGAAAATCGAGAATTTAAATCAGGAAATCATTGAGCTACAAACACTTATGAGTAGTAAAGAGGCCCAGCTTGATCAGACAAATGCTATGCTGAAAGAGAAAGATGAACGTGTTGAGATAATGCAGAACGAACTAAACGATACAAAGCTGAAAATTTCCGAAGCTGAAGCAGCAGTAGAACACATTGTGGATCTCACAAATAAATTGGTGATCTCCATCAAAGACGGCGACGAAGACGATGTTTTGAAACTGAACGAAAACCTTAGCCTCAATCTACAGCAGCAGTTATTCAAGAAACCTACCGATAACATAAGATTACAGAAGAAACAGCTCGAAACCGAGCTAGAACTCACCAAGGAAAGCTTGAGACGTAAAGAAATGGAGATTCTAGCTGCAGAAAGAGCCCTGACCGTTAAAGACGAGGAACTAAAAACGGTTCAGGAAAGATTAGATGGAAAGGAGAAAGAATTCGAGAAGATGAAGGAAGAGATGGATGAAGAAGGCAAGCATCTGAGGGAGCAATACACATTGGCACAAGACAATGTTGGAGGAGACTTGGCAATTGAAAGGCTTCAATTTGAAGCTGCTCAGTTAGAGGTCGAAGCAGCTACTAGCGCTCTTCAAAAACTCACGGACATGAGCCGAGATCTTCTGAATAAAGCTGGTCGTAGCCTCGAGGCCGATATCGGATCAAGAAGCATTCGCATTCAGCAGCACGACGACGATAACAACGGCGTGAATGGCATTGATAATAGTAACTCAAGATTCAGTGAAGTGAAGGTAGAAGTTTCCCGTCTTTCATCTCTAACTGAACAGCTCTTGAAGGAAGCTGGTATATTTGTTGATGCGGATTAG 2685 41.94 MADDDYNDLDMGYEDEPQEPEIEEGAEEELDTNTDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQRSSLRFSRNRTNFFYSTNQKRRSHPLKVVQSVLNNCKSNLNDNGANEEAKLLLERLYAQTQRLEEHVSKDPHFPQDVWLGLSLENFESDLQAALAVLKKKEEDLQDAERTILLERSQLNNAREKLEKQEEEITVAYRKQQELEDELKEANLNLASQARLIDELKLQIREKDEGIAAVESALALKEDELKRMRADLAMKSEEAFKTNCELKSKSQLLTEANEVVKRQEVELQMLKRTVVEKEKELELSVKLQKLEVERLEVVEKNLEKRTMEWLLAQEELKKTRKEASKKTVEMNKTVNDLNRVKKLLADVKSELVSSQKSLVSSRKKIEEQEDILERQMAELEEQNKGINAYMSSLKDAQIEVESERVKLRFVEAHNKELEGDLVKEKELTDELQQQLKREKSYLQQATEEKSLLQNELEHKRIEFEKTHKLLQDKASELVEAKLEIQHLKSKQVSLQLLLEEKDLEILDAQKKIENLNQEIIELQTLMSSKEAQLDQTNAMLKEKDERVEIMQNELNDTKLKISEAEAAVEHIVDLTNKLVISIKDGDEDDVLKLNENLSLNLQQQLFKKPTDNIRLQKKQLETELELTKESLRRKEMEILAAERALTVKDEELKTVQERLDGKEKEFEKMKEEMDEEGKHLREQYTLAQDNVGGDLAIERLQFEAAQLEVEAATSALQKLTDMSRDLLNKAGRSLEADIGSRSIRIQQHDDDNNGVNGIDNSNSRFSEVKVEVSRLSSLTEQLLKEAGIFVDAD* 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3300821 3312481 - Chy4G070920.1 Chy04g00374 224273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00374 894 Coils Coil 354 381 - -
Chy04g00374 894 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 61 116 IPR006111 GO:0003677|GO:0003899|GO:0006351
Chy04g00374 894 SMART RNA_pol_Rpb6_2 57 110 IPR006110 GO:0003677|GO:0003899|GO:0006351
Chy04g00374 894 Coils Coil 599 668 - -
Chy04g00374 894 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 149 889 - -
Chy04g00374 894 Pfam RNA polymerase Rpb6 59 110 IPR006110 GO:0003677|GO:0003899|GO:0006351
Chy04g00374 894 Coils Coil 386 406 - -
Chy04g00374 894 Coils Coil 459 497 - -
Chy04g00374 894 PIRSF RpoK/RPB6 605 679 IPR006111 GO:0003677|GO:0003899|GO:0006351
Chy04g00374 894 PIRSF RpoK/RPB6 232 302 IPR006111 GO:0003677|GO:0003899|GO:0006351
Chy04g00374 894 PIRSF RpoK/RPB6 735 807 IPR006111 GO:0003677|GO:0003899|GO:0006351
Chy04g00374 894 PIRSF RpoK/RPB6 324 584 IPR006111 GO:0003677|GO:0003899|GO:0006351
Chy04g00374 894 PIRSF RpoK/RPB6 1 133 IPR006111 GO:0003677|GO:0003899|GO:0006351
Chy04g00374 894 SUPERFAMILY RPB6/omega subunit-like 1 132 IPR036161 GO:0003677|GO:0003899|GO:0006351
Chy04g00374 894 Coils Coil 221 304 - -
Chy04g00374 894 Coils Coil 515 563 - -
Chy04g00374 894 Coils Coil 803 823 - -
Chy04g00374 894 MobiDBLite consensus disorder prediction 1 56 - -
Chy04g00374 894 PIRSF RPB6 226 308 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Chy04g00374 894 PIRSF RPB6 393 518 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Chy04g00374 894 PIRSF RPB6 600 685 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Chy04g00374 894 PIRSF RPB6 728 792 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Chy04g00374 894 PIRSF RPB6 664 748 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Chy04g00374 894 PIRSF RPB6 494 585 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Chy04g00374 894 PIRSF RPB6 1 133 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Chy04g00374 894 Coils Coil 312 339 - -
Chy04g00374 894 Coils Coil 184 204 - -
Chy04g00374 894 Coils Coil 711 791 - -
Chy04g00374 894 Coils Coil 571 591 - -
Chy04g00374 894 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 64 78 IPR020708 GO:0003677|GO:0003899|GO:0006351
Chy04g00374 894 MobiDBLite consensus disorder prediction 1 49 - -
Chy04g00374 894 Gene3D - 3 133 IPR036161 GO:0003677|GO:0003899|GO:0006351
Chy04g00374 894 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 149 889 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00374 - - - csv:101208859 1280.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00374 Chy-Chr4:3300821 Chy06g00919 Chy-Chr6:6763719 9.86E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g496 Blo01g01392 . . . . Bpe02g00557 . . . . Cma01g01507 . Car09g00395 . . . Cpe06g00331 . . . . . . . Cla05g01731 Cam05g1844 Cec05g1856 Cco05g1916 Clacu05g1832 Cmu05g1715 Cre05g1846 Cone4ag1779 Cone7ag1694 . . Lsi04g02121 Csa03g04327 Chy04g00374 . . . . . . . . . Sed05g1707 Cmo01g01562 Cmo09g00457 Cma09g00450 . . . . Cpe02g00447 Bhi09g02230 Tan01g3630 Cmetu04g2943 . Hepe01g2013 Mch11g0550 . . . . . . . . . . . Cme04g00416
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010102 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00374 Chy_Chr04 FPKM 29.418159 31.125746 20.122599 18.481375 31.769196 35.51421 30.230268 24.666798 25.003548 22.854666