Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00380 ATGAAGAATGTTTGTTGGCCATACTTTGATCCTGATTTTGATACTCTTCCTGAGAGGATAAATGGCCCAACTTGCAGGGTCTGCATTGACAATGAAAGCATGGAGGATTGCACCATTGTCAAGGTTGATAGCTTGAACAAACAAGGTCTCCTCCTTGAAGTGGTTCAAATTTTAACAGATTTGAACCTTTCAATCTCAAAAAGCTACATTTCTTGTGATGCAGGCTGGTTCATGGACGTTTTTCATGTAAAAGATGAGAATAGCCATAAACTTACCGACCAGAAAGTCATCAACTCTATCCAACAGGCCATTGGAACAACCAAAGGACCTGATAACTCGGCCAAAACCAGACGCTATGTTAACAAACTTCTCAATTCTGATAACTCCGGCGAACATACGGCAATTGAAATGACCGGTACCGATCGGCCTGGTCTTTTCTCTGAGATATCTGCTGCCTTGGCTGACCTCCATTGCAACGTTGTGGAAGCTCATGCTTGGAGCCATAATGCTCGTTTGGCCTGCATTGCTTACATTTCGGACCAATCTACAGATAGTCCTATTGAGGACCCCCACCGGCTCGCCAACATTGAGGAGCATCTTTCCACTGTTCTCAGGGCGGCGACTGCCCCTCCAATTGCCAGTTGGACGCATACCCTGCAACAAGAAGTGAAGATATCAGCCACAATAACAACCAATGTGGAGCGGCGGCTACACCAACTCTTGGTCTCGGTTAAGGATTATGATTGGACCTCTGAATCCATTTCGAGAAGACCTAAAAGAAAAGAAGAGTGGAGGAAGACAACGGTGAGCATTGAAAGCTGTGATCAGAAAGGATACTCAATTGTCAGCATCGAGTGCAAGGATCGGCCGAGGCTTATGTTTGACACAGTTTGTACTCTTACTGATATGCAATATGTAATCTTTCATGCTTCCATTAGCTCCAAGAAAGATAATGCTTTTCAGGAGTACTTCATCAGACATGTGAATGGGTACGCCTTGAATTCAGACTATGACAAGCACAGGGTGGTAAAATGCTTAGAGGCAGCCATTGAACGTCGTGTTTGCGAGGGAGTGAGGCTGGAGTTATGTGCAAACAACAGGGTGGGATTGCTATCTGATATAACAAGGGTTCTGCGGGAAAATGGGCTGAATGTGGTGAGAGCAGACATAGCAACACAAGGAGAGAAGGCCATTAATGCATTTTATGTCAAAGACATTTCAGGCAAAGAGGTAGATATGGAGATGGTAGAGTCGGTGAAGAAAGAAATTGGCCCTGTTGTACTTCGAGTCAAGAATGAGACAAGCCCTCCATCGACGCCTCAAATTACCAGGTCTCGTTTCTCCTTCAGCGACATGCTCAAGTCTCAGCTCGAGCGCCTCTCTCACAACTTCATTGCTATCAGGCATTGA 1410 45.25 MKNVCWPYFDPDFDTLPERINGPTCRVCIDNESMEDCTIVKVDSLNKQGLLLEVVQILTDLNLSISKSYISCDAGWFMDVFHVKDENSHKLTDQKVINSIQQAIGTTKGPDNSAKTRRYVNKLLNSDNSGEHTAIEMTGTDRPGLFSEISAALADLHCNVVEAHAWSHNARLACIAYISDQSTDSPIEDPHRLANIEEHLSTVLRAATAPPIASWTHTLQQEVKISATITTNVERRLHQLLVSVKDYDWTSESISRRPKRKEEWRKTTVSIESCDQKGYSIVSIECKDRPRLMFDTVCTLTDMQYVIFHASISSKKDNAFQEYFIRHVNGYALNSDYDKHRVVKCLEAAIERRVCEGVRLELCANNRVGLLSDITRVLRENGLNVVRADIATQGEKAINAFYVKDISGKEVDMEMVESVKKEIGPVVLRVKNETSPPSTPQITRSRFSFSDMLKSQLERLSHNFIAIRH* 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3363601 3365709 + Chy4G070980.1 Chy04g00380 224279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00380 469 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR2 2 466 - -
Chy04g00380 469 CDD ACT_ACR_4 357 428 - -
Chy04g00380 469 Gene3D - 130 208 - -
Chy04g00380 469 ProSiteProfiles ACT domain profile. 134 214 IPR002912 -
Chy04g00380 469 Pfam ACT domain 134 201 IPR002912 -
Chy04g00380 469 Pfam ACT domain 359 405 IPR002912 -
Chy04g00380 469 ProSiteProfiles ACT domain profile. 39 121 IPR002912 -
Chy04g00380 469 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 466 IPR040217 -
Chy04g00380 469 CDD ACT_ACR_2 133 206 - -
Chy04g00380 469 ProSiteProfiles ACT domain profile. 359 437 IPR002912 -
Chy04g00380 469 SUPERFAMILY ACT-like 357 426 IPR045865 -
Chy04g00380 469 CDD ACT_ACR_3 279 353 - -
Chy04g00380 469 SUPERFAMILY ACT-like 34 102 IPR045865 -
Chy04g00380 469 SUPERFAMILY ACT-like 130 204 IPR045865 -
Chy04g00380 469 Gene3D - 358 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00380 - - - csv:101219701 944.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00822 Chy-Chr2:5209538 Chy04g00380 Chy-Chr4:3363601 5.54E-140 dispersed
Chy04g00380 Chy-Chr4:3363601 Chy07g01484 Chy-Chr7:19165589 2.83E-140 dispersed
Chy04g00380 Chy-Chr4:3363601 Chy06g01994 Chy-Chr6:23912670 2.68E-128 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g502 . Blo12g01071 . Bda03g00076 . . Bma04g00073 . . . Cma01g01514 . . . . . . . . . . . . . Cla05g01724 Cam05g1837 Cec05g1851 Cco05g1908 Clacu05g1824 Cmu05g1708 Cre05g1839 Cone4ag1777 . . . Lsi04g02116 Csa03g04320 Chy04g00380 . . . . . . Bpe04g00062 . . Sed13g2012 Cmo01g01567 . . . . . . Cpe02g00442 Bhi09g02223 Tan01g3625 Cmetu04g2629 . Hepe01g2008 Mch11g0544 . . . . . . . . . . . Cme04g00426
Vvi18g1176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0807 Cone20ag0412 . Csa03g04320 Chy04g00380 . Blo17g00230 . . Bda13g01544 . Bpe14g00321 . Bma02g00288 . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011487 0 2 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00380 Chy_Chr04 FPKM 9.029505 8.232202 7.879775 7.387079 7.744787 7.473414 7.709079 15.024956 13.40812 14.065573