Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00388 ATGGCTATGGACGATACTGAAAGCTGTAGTAGTAGACCGGTGGATGACTTCTCAGTTCAGACTTGGAGACAGAAGCAGAAGGTTGGTGTTTACGACGAAGTTCTTCGTCGACTCAGGCTGTCTCACGAAGCGGAGACCAGCCTTCCTGGTTTTGAGGATGAACTCTGGGCTCATTTTCATCGACTTCCTACTAGGTATGCTATGGACGTCAATGTAGAGAGGGCTGAAGATGTTCTCATGCACAAAAATCTTCTCTATATGGCACATGATCCTGCTACTCGACCTGCAATTGACGTCCGTCTCGTACAGGTTCATTCATCTCCTGGCAGGAACTTTGGCAAGTCAGTTAATTGGAGCTTGAAGGAAAAAGTGGACCAGGAGCGGTTTTCTGGTTATGACAGCAATCAGAGACACCACCCCCCACCAGCATTTGGTTCATCAACACGGGTCGAATATGGTTCTGAGACCAGCCAATTACATGATATAGACCAACCGGGGACTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAATTGCTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCACATGCTTTTTCAACAACAGATGGCTTTTCCTTGGATGTTTTTGTAGTTGATGGTTGGGTAATTGAGGATACCAAGCAGCTAAAAGATATACTGGCAGAAGAAATATCAAAGATTCAGAAAAGGCATCCTCTATTCACACCTTGCATTTTCCATACTGAGAAGCAAGACAAATTTGGAGTCAAGTTCACTACAAAGTATGTCAACATTCCAAGAGACGAAGTGGATGCATGGGAAATTGATGTGAGCCTGCTAGTATTTGAGAAGAAAATTGCGTCTGGATCTCTTAGTGACTTGTATAAAGGCACCTTCTATGGTCAAGATGTTGCTATTAAGCTTCTAAAAAATGAAAACTTGAATGAGACTGTCCGGCGGGAATTTGTTCAAGAAATTCATATCATGAGAAAACTTCGGCACAAGAATGTTGTCCAATTTATTGGTGCATCTACCAGGCCTCCAAGCCTTTTCATTGTTACAGAGTACATGTCTGGTGGAAGCTTACACGACTTCTTACATCAACAAAAGGGCGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAGTTGATGTGTCGAAGGGAATGGACTATTTGCATCAAAAGAATATCATCCATAGAGATCTAAAAGCTGCAAATCTTTTGATGGATGAATATGGGGTTGTCAAGGTAGCTGATTTTGGTGTTGCTAGAGTGCTAGCTCAATCTGGTGTGATGACTGCCGAAACTGGAACATATCGTTGGATGGCTCCGGAGGTTATTGAGCACAAACCGTATGATCATAAAGCTGATGTTTATAGCTTTGGGATTGTGTTGTGGGAGCTGCTTACAGGACAGCTGCCTTATAATAACTTGACTCCGTTACAAGCAGCAATAGGAGTGGTCCAGAAGGGTCTGAGGCCTAAGATTCCGAGGCATGCTCATCCGATGATCGTGGATTTGCTCGAGAAATGCTGGCTGCAGGATCCATCTTTGAGACCCGAATTCACTGAAATTACGAGACTTCTACAACAGACACCACCAAAGGAGGTAGGGGAACGTTGTGTTGAAACTGTTAAAATTTATTCATTTGTTTCTCGGGCACTTACACGTTGGAACAAGATTATTATAATAAGAAACTTGGGAGTGACAGGAACCTTCTGGAAGATGATTAAAAATTCTGGGGTGGAGAAGGACGTTCTATGGAGGAGAGCCAACAAACTATACGACGGGGAATCGAGCAAATCTTTGCTTATGGAAAATCATGGATGTATTAGATGTGAGTGA 1866 42.87 MAMDDTESCSSRPVDDFSVQTWRQKQKVGVYDEVLRRLRLSHEAETSLPGFEDELWAHFHRLPTRYAMDVNVERAEDVLMHKNLLYMAHDPATRPAIDVRLVQVHSSPGRNFGKSVNWSLKEKVDQERFSGYDSNQRHHPPPAFGSSTRVEYGSETSQLHDIDQPGTFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWVIEDTKQLKDILAEEISKIQKRHPLFTPCIFHTEKQDKFGVKFTTKYVNIPRDEVDAWEIDVSLLVFEKKIASGSLSDLYKGTFYGQDVAIKLLKNENLNETVRREFVQEIHIMRKLRHKNVVQFIGASTRPPSLFIVTEYMSGGSLHDFLHQQKGVLSFPSLLRVAVDVSKGMDYLHQKNIIHRDLKAANLLMDEYGVVKVADFGVARVLAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVYSFGIVLWELLTGQLPYNNLTPLQAAIGVVQKGLRPKIPRHAHPMIVDLLEKCWLQDPSLRPEFTEITRLLQQTPPKEVGERCVETVKIYSFVSRALTRWNKIIIIRNLGVTGTFWKMIKNSGVEKDVLWRRANKLYDGESSKSLLMENHGCIRCE* 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3429929 3437770 - Chy4G071060.1 Chy04g00388 224287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00388 621 PRINTS Tyrosine kinase catalytic domain signature 444 454 IPR001245 GO:0004672|GO:0006468
Chy04g00388 621 PRINTS Tyrosine kinase catalytic domain signature 463 485 IPR001245 GO:0004672|GO:0006468
Chy04g00388 621 PRINTS Tyrosine kinase catalytic domain signature 507 529 IPR001245 GO:0004672|GO:0006468
Chy04g00388 621 PRINTS Tyrosine kinase catalytic domain signature 361 374 IPR001245 GO:0004672|GO:0006468
Chy04g00388 621 PRINTS Tyrosine kinase catalytic domain signature 398 416 IPR001245 GO:0004672|GO:0006468
Chy04g00388 621 ProSiteProfiles ACT domain profile. 174 250 IPR002912 -
Chy04g00388 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
Chy04g00388 621 CDD STKc_MAP3K-like 293 536 - -
Chy04g00388 621 Gene3D - 172 245 - -
Chy04g00388 621 SUPERFAMILY ACT-like 172 238 IPR045865 -
Chy04g00388 621 Pfam Protein tyrosine and serine/threonine kinase 288 535 IPR001245 GO:0004672|GO:0006468
Chy04g00388 621 SUPERFAMILY Protein kinase-like (PK-like) 268 535 IPR011009 -
Chy04g00388 621 ProSiteProfiles Protein kinase domain profile. 287 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00388 621 Coils Coil 224 244 - -
Chy04g00388 621 MobiDBLite consensus disorder prediction 129 149 - -
Chy04g00388 621 Gene3D Phosphorylase Kinase; domain 1 280 365 - -
Chy04g00388 621 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 12 542 - -
Chy04g00388 621 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE 12 542 - -
Chy04g00388 621 Gene3D Transferase(Phosphotransferase) domain 1 366 559 - -
Chy04g00388 621 SMART serkin_6 287 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00388 Chy-Chr4:3429929 Chy06g02262 Chy-Chr6:26614440 0 dispersed
Chy06g00539 Chy-Chr6:3670357 Chy04g00388 Chy-Chr4:3429929 1.61E-21 dispersed
Chy07g00272 Chy-Chr7:2134058 Chy04g00388 Chy-Chr4:3429929 4.09E-26 dispersed
Chy09g01282 Chy-Chr9:14829160 Chy04g00388 Chy-Chr4:3429929 1.14E-24 dispersed
Chy12g00047 Chy-Chr12:415459 Chy04g00388 Chy-Chr4:3429929 5.24E-46 dispersed
Chy04g00388 Chy-Chr4:3429929 Chy12g01272 Chy-Chr12:17302183 4.83E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71174 PF07714 PK_Tyr_Ser-Thr 3.00E-72 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00388 - - cpep:111789352 942.184