Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00389 ATGGCCGCTGTCACCTCCGCCGCCGTCGCTATCCCTTCCTTCACCGGCCTCAAGTCCACATCCTCCTCCAAACCCACCTCACCCATCCGCCTCCCTTCCCCGGTATCCCAAAAGCTAAGCATCAAAGCCTCTCTTAAGGACGTCGGTGTAGCCGTTGCCGCCACCGCCGCCAGCGCTCTTTTGGCCTCAAACGCCATGGCCATCGAGATCTTGCTGGGTGGGGACGACGGTTCTCTGGCATTCGTTCCGAACAATTTCACGGTGGCGTCGGGGGAGAAAATCACGTTCAAGAACAACGCGGGATTCCCACACAACGTGGTGTTCGATGAGGATGAAATTCCGAGCGGAGTTGATGCGGGAAAGATCTCGATGGATGAGGAGAATCTTTTGAATGCTCCCGGAGAGGTTTATGAAGTTCAGCTTACTGAAAAAGGAAGTTACTCGTTCTACTGTTCGCCTCATCAAGGCGCTGGAATGGTTGGAAAAGTTACGAGACTGTATGGCCGTAGAGCTCATAAATGGAGATTTAATAATTCACTAATGATGTAA 549 52.46 MAAVTSAAVAIPSFTGLKSTSSSKPTSPIRLPSPVSQKLSIKASLKDVGVAVAATAASALLASNAMAIEILLGGDDGSLAFVPNNFTVASGEKITFKNNAGFPHNVVFDEDEIPSGVDAGKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTRLYGRRAHKWRFNNSLMM* 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3452929 3453588 + Chy4G071070.1 Chy04g00389 224288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00389 182 Pfam Copper binding proteins, plastocyanin/azurin family 69 164 IPR000923 GO:0005507|GO:0009055
Chy04g00389 182 Gene3D - 68 164 IPR008972 -
Chy04g00389 182 PRINTS Plastocyanin signature 73 92 IPR002387 GO:0005507|GO:0009055
Chy04g00389 182 PRINTS Plastocyanin signature 145 164 IPR002387 GO:0005507|GO:0009055
Chy04g00389 182 PRINTS Plastocyanin signature 96 114 IPR002387 GO:0005507|GO:0009055
Chy04g00389 182 SUPERFAMILY Cupredoxins 65 164 IPR008972 -
Chy04g00389 182 CDD Plastocyanin 68 164 IPR002387 GO:0005507|GO:0009055
Chy04g00389 182 Coils Coil 182 182 - -
Chy04g00389 182 PANTHER PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED 1 164 - -
Chy04g00389 182 ProSitePatterns Type-1 copper (blue) proteins signature. 145 159 IPR028871 -
Chy04g00389 182 PRINTS Type I copper blue protein family signature 87 100 IPR001235 GO:0005507|GO:0009055
Chy04g00389 182 PRINTS Type I copper blue protein family signature 143 157 IPR001235 GO:0005507|GO:0009055
Chy04g00389 182 PRINTS Type I copper blue protein family signature 102 117 IPR001235 GO:0005507|GO:0009055
Chy04g00389 182 PANTHER PLASTOCYANIN 1 164 - -
Chy04g00389 182 TIGRFAM cyanin_plasto: plastocyanin 68 164 IPR002387 GO:0005507|GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00389 K02638 petE; plastocyanin - csv:101211484 279.256
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g157 Blo01g01613 . . . Bpe02g00333 Bpe04g00263 Bma04g00264 Bma01g02387 . . . Cma09g00082 . . . Cpe06g00046 . . . . . . . . . . . . . . . . . . . Lsi04g01781 . Chy04g00389 . . . . . . . . . . . Cmo09g00081 . . . Car09g00071 . . . . . . . . . Cla05g01595 Cam05g1706 Cec05g1706 Cco05g1762 Clacu05g1693 Cmu05g1582 Cre05g1699 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011843 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 0 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00389 Chy_Chr04 FPKM 15.761508 19.976303 13.040005 13.50066 14.753081 12.737733 14.876345 10.54385 11.007006 10.254625