Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00395 ATGAAGGATGAAAACCGAGCTCTGACGAACGGTGGTTCTTGTAGATCTTCCAGATTTTCCTCTCTTTTGGCTTCTGGAGATCGCGATTATCTTCTCTCACCCACCGGAGCTCAGGTTGAAGTATCCAATCTCGACGGCAAGGTTTTGGGCCTTTACTTCTCTGCCAACTGGTACCCACCGTGTCGGAACTTCAACCAGATTCTTGTCCGAACTTACGAGAAGCTTCAAGATAATGGATCAAATTTTGAAGTGGTTTATGTATCCTCCGATGAGGATTCCGACGCCTTCAATGAGTATCGTGCGAGTATGCCGTGGCCGGCGATTCCATTCTCCGATTTGGAAACTAAAATTGCTTTGAACAGGAAGTTCGGGATTGAAGGGATTCCGTGTTTGATTATATTGCAGCCGCGTGAAAGTAAGGATGAAACGGTGACGTTGCATGAAGGTGTGGAGGTTGTGTACCGTTATGGAGTGGATGCATTCCCATTTACACAGGAGAGATTGGAGCAGTTGAAGGAAGAGGATAGAGAAAAGGAAGAAAATCAGACTTTGGTCACTTTGTTAACAAATAACTACAGAGATTATCTCTTGGCTCATTCTTTCCCTAAACAGGTGCCTGTTGTTTCATTAGTAGGTAAGACTGTCGGGCTCTACTTCTCGGCGAAATGGTGTCTTCCCGGTATGTTCACGCCAAAGCTGATTTTGGTGTACAACAAGATAAAGCGAATGGTAGAGATGAAAGAAGACGAAGATTTTGAGATTGTTTTCGTGTCAAGTGATCGAGACGAAGATTCATTCCATTCTTATTTTGGTTCGATGCCGTGGTTAGGATTGCCATTTGGAGATCCAATGATTAAAGAACTTGCCAAACATTTTGACGTGCAAGGCATTCCTTGTTTGATAATCTTAGCTCCAAATGGCAAAACAATCACCAAACAAGGTAGAAATTTAATAAACTTGTACAGAGAAAACGCTTATCCGTTCACGGGAGCAAGATTGGAAGAGTTGGTAAAAGAAATGGGGGAAGAGGCAAAAAAGCTTCCCGCGTCGGTGCGCCATGCCGGGCATCGACATGAGCTGAATTTGGTGTCGGAAGGAAATGGGGGAGGACCTTTCATTTGTTGTGAGTGTAATGAGCAGGGTTCGGGATGGGCGTATCAGTGCCTTGAATGTGGATTCGAGGTGCATCCAAAGTGTGTTGAGATGAACAACCGCAACTCTCCCATCAATTAA 1233 44.53 MKDENRALTNGGSCRSSRFSSLLASGDRDYLLSPTGAQVEVSNLDGKVLGLYFSANWYPPCRNFNQILVRTYEKLQDNGSNFEVVYVSSDEDSDAFNEYRASMPWPAIPFSDLETKIALNRKFGIEGIPCLIILQPRESKDETVTLHEGVEVVYRYGVDAFPFTQERLEQLKEEDREKEENQTLVTLLTNNYRDYLLAHSFPKQVPVVSLVGKTVGLYFSAKWCLPGMFTPKLILVYNKIKRMVEMKEDEDFEIVFVSSDRDEDSFHSYFGSMPWLGLPFGDPMIKELAKHFDVQGIPCLIILAPNGKTITKQGRNLINLYRENAYPFTGARLEELVKEMGEEAKKLPASVRHAGHRHELNLVSEGNGGGPFICCECNEQGSGWAYQCLECGFEVHPKCVEMNNRNSPIN* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3492611 3497365 - Chy4G071130.1 Chy04g00395 224294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00395 410 Pfam Thioredoxin-like 46 137 IPR012336 -
Chy04g00395 410 Pfam Thioredoxin-like 212 308 IPR012336 -
Chy04g00395 410 ProSiteProfiles Thioredoxin domain profile. 154 342 IPR013766 -
Chy04g00395 410 Gene3D Glutaredoxin 24 165 - -
Chy04g00395 410 Gene3D Glutaredoxin 192 329 - -
Chy04g00395 410 PANTHER THIOREDOXIN 16 399 - -
Chy04g00395 410 SUPERFAMILY Thioredoxin-like 202 312 IPR036249 -
Chy04g00395 410 SUPERFAMILY Cysteine-rich domain 343 401 IPR046349 -
Chy04g00395 410 SUPERFAMILY Thioredoxin-like 31 135 IPR036249 -
Chy04g00395 410 Pfam C1 domain 356 400 IPR004146 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00395 K17609 NXN; nucleoredoxin [EC:1.8.1.8] - csv:101212204 809.675
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00395 Chy-Chr4:3492611 Chy09g00087 Chy-Chr9:768554 2.08E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g172 . Blo12g00875 . . . Bpe04g00258 Bma04g00259 . . . . Cma09g00088 . . . Cpe06g00051 . . . . . . . . . . . . . . . . . . . Lsi04g01774 . Chy04g00395 . . . . . . . . . . . Cmo09g00086 . . . Car09g00076 . . . . . . . . . Cla05g01601 Cam05g1712 Cec05g1712 Cco05g1769 Clacu05g1699 Cmu05g1588 Cre05g1707 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012145 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00395 Chy_Chr04 FPKM 16.561403 30.530161 21.544664 21.907942 15.252782 9.779172 14.22701 14.796592 14.391488 17.620859