Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00399 ATGGCTCAAACCACTTCCAATCACACTCAGACAGTCTCCGGTTGGGCAGCCCATGATTCTTCCGGCAAGATCACTCCATATACTTTCAAACGCAGAGAAAACGGCCCTGACGATGTGACCATAGAGATTTTGTACTGTGGAATATGCCATACCGATATTCACTACGCTAAAAATGAGTGGGGCATCACTATGTATCCTGTAGTTCCCGGGCATGAGATGACAGGGGTGATCACGAAGGTAGGAAACAACGTGAAGAAGTTCAAAATAGGAGACAAAGTGGGTGTTGGATGTATAGCCGCTACATGTTTGAACTGTGAATTCTGCCAAGATTCCCAAGAGAATTACTGTGAAAATTTACAGTTTTCGTACAACGGAATCTTCTGGGATGGCAGCATAACATACGGGGGATACTCCAAAATGTTTGTTTCAGATCAAAGGTACGTTGTGCACATACCGGAGAGCCTACCAATGGACGCAGCAGCGCCGTTGCTATGTGCGGGAATAACCGTGTTTACCCCGATGAAAGACATCGGTTTGATTGATTCGCCAGCGAAGAAAGTGGGAGTGGTGGGGCTTGGAGGGCTTGGCCATATAGCAGTAAAATTTGCAAAGGCGTTTGGGCACCATGTGACAGTGATCAGTACCTCTGCTTCAAAGGAACAAGAAGCCAAAAAACGACTTGGGGCTGACGAGTTCATAGTCAGTAAAGATTCTCAACAAATGCAGAGTAATAAGAGGACGCTCGATTTTATAATGGATACAGTATCAGCACAGCATTGCATAGGACCAATATTGGAGCTGCTAAAAGTGAATGGGACACTGTCAATTGTGGGAGCTCCAGAAAAGCCCATTCAATTGCCTTCTTTTCCTTTAATATTTGGGAAGAGGACAGTGAAGGGAAGCATAATTGGTGGAATACAAGAGACACAAGAGATGATGGATCTGTGTGGGAAATACAACATTACATGTGATATCGAAGTGATTAAGCCACACGAAATCAACCAAGCAATGGAACGCCTTATCCAAAACGATGTTCGATACCGATTTGTCATTGACATTGCCCAAAACAAACCCGATTCCAACATTTGA 1089 44.35 MAQTTSNHTQTVSGWAAHDSSGKITPYTFKRRENGPDDVTIEILYCGICHTDIHYAKNEWGITMYPVVPGHEMTGVITKVGNNVKKFKIGDKVGVGCIAATCLNCEFCQDSQENYCENLQFSYNGIFWDGSITYGGYSKMFVSDQRYVVHIPESLPMDAAAPLLCAGITVFTPMKDIGLIDSPAKKVGVVGLGGLGHIAVKFAKAFGHHVTVISTSASKEQEAKKRLGADEFIVSKDSQQMQSNKRTLDFIMDTVSAQHCIGPILELLKVNGTLSIVGAPEKPIQLPSFPLIFGKRTVKGSIIGGIQETQEMMDLCGKYNITCDIEVIKPHEINQAMERLIQNDVRYRFVIDIAQNKPDSNI* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3533198 3535934 - Chy4G071170.1 Chy04g00399 224298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00399 362 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 6-RELATED 2 356 - -
Chy04g00399 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 321 IPR036291 -
Chy04g00399 362 Gene3D - 166 323 - -
Chy04g00399 362 PANTHER ALDEHYDE REDUCTASE 2 356 - -
Chy04g00399 362 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Chy04g00399 362 Pfam Alcohol dehydrogenase GroES-like domain 36 150 IPR013154 -
Chy04g00399 362 SUPERFAMILY GroES-like 17 180 IPR011032 -
Chy04g00399 362 Gene3D - 15 353 - -
Chy04g00399 362 CDD CAD1 14 352 - -
Chy04g00399 362 SMART PKS_ER_names_mod 19 351 IPR020843 GO:0016491
Chy04g00399 362 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00399 Chy-Chr4:3533198 Chy11g00067 Chy-Chr11:729780 7.42E-142 dispersed
Chy04g00399 Chy-Chr4:3533198 Chy01g00100 Chy-Chr1:657397 4.71E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00399 K00083 - csv:101213170 722.235