Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00406 ATGAAGAAAAGATCGATTGATCCTTTTGTTTGCCGTTTAAGTTCCTTCTTCATATTCCTTTTCTATGCTAGTTTATGCTTTGCCAATCGCGATATGGAAGCGCTGTTGAAGATTAAGAGTTCAATAATCGGACCGGGGAGGTCGGAGCTTGGTGATTGGGAGCCGTCGCCAACGTCGTCTCCGTCTGCTCATTGTGATTTCTCTGGTGTTACTTGCGATGGTGATAATAGAGTTGTTGCGCTTAACGTCTCCAATCTCCGTTTATTTGGCTCGATTCCGGCGGAGATTGGAATGTTGGAGAAGATTGAGAACCTGACTTTAGTGAGCAACAATCTAACTGGAAAGCTTCCTCTTGAAATGGCGAAACTCACGTCGCTTAAGTTTCTTAACCTATCTAACAATGCATTTCGTGATAATTTGACGGCTGTAATCACGGTAGGAATGACGGAACTGGAGGTTTTTGATATCTATAACAATAATTTCTTCGGACTGCTTCCGGTGGAATTTGTAAAATTGAAGAAGCTCAAGCATCTTGACCTTGGCGGTTGCTACTTTACTGGTCAAATTCCTGCTGTTTACTCGGAGATGCAGTCGTTGGAGTTCTTGAGCGTTCGGGGAAACATGCTTACCGGAAGGATTCCGGCGAGTTTGGGGCGGTTGAAGAATCTTAGGTATCTGTACGCCGGATATTTTAATCATTACGACGGAGGTATTCCTGCAGAGTTTGGATCGTTGAGTTCCCTTGAGCTTATCGATTTAGCTAACTGTAACCTCACTGGTGAAATTCCTCCGAGTTTGGGGAATTTGAAGCACTTGCATAGTCTATTTCTACAAGTAAACAATCTTACTGGTCGGATTCCGTCTGAACTTTCCGGACTGATTAGCCTCAAGTCATTGGACCTCTCGCTGAACGAATTAACCGGAGAGATACCGTCGAGTTTCGTTGAGCTGCAGAATCTTACGCTGATCAATTTGTTCAATAACAAACTTCATGGTCCAATTCCTGGTTTCGTCGGTGATTTTCCTCATCTCGAAGTGCTTCAGTTATGGAATAACAACTTCACGCTCGAGCTCCCCGAGAATCTAGGGCGTAACGGCAAGCTGTTTCTGCTCGATGTGGCAACTAATCATCTAACTGGCCTCATTCCTCCCGATTTATGTAACGGTAGGTTGAAGACTTTGATTCTTTTAGATAATTACTTCTTTGGGCCCATCCCTGAGAAATTAGGCCGGTGTGATTCGCTTACGAAAATAAGAATTGCGGGAAATTTCTTCAATGGAACGGTTCCGGCAGGATTCTTCAACTTTCCGGCGTTGGAGCAACTCGATATCAGTAACAATTACTTCTCCGGGGCTCTTCCGTCGCAAATGTCAGGGGAGTTTCTTGGAAGTCTACTGCTTAGTAACAACCATATCACCGGGGACATCCCGGCAGCGATTAAGAATTTAGAGAACTTGCAGGTTGTTTCTCTGGAACATAACCAATTCACCGGGAATTTGCCCAAGGAAATATTTCAGTTAAACAAGTTGCTGAGGATTAACATCAGTTTTAACAATATTAGCGGCGAAATTCCGCATTCGGTTGTTCAGTGCACTTCGTTAACGTTAGTTGATCTCAGCGAAAATTATCTCGTTGGCTTAATTCCCAGAGGAATTTCGAAGCTGAAAATCTTGAGCGTCCTCAATTTGTCTAGAAATCACTTGACAGGCCAAATTCCGAACGAGATTCGGTCGATGATGAGTCTTACAACTCTTGATTTGTCTTACAACAATTTCTTCGGCAAAATCCCCTCCGGCGGTCAGTTTTCTGTATTCAACGTCAGTGCATTCATCGGAAACCCTAATCTCTGCTTCCCCAACCATGGGCCATGCGCATCTTTACACAAGAATTTAAAATATGTTAAACTAATCATCCCAATCGTCGCGATATTCATCGTTCTGTTATGTGTACTCGCTGCACTTTATCTCCGGAAGAGAAAGAAGATTCAGAAATCTAAGGCGTGGAAACTCACAGCGTTCCAACGCCTCAACTTCAAAGCAGAGGACGTCCTGGAATGCTTGAAGGATGAAAATATCATCGGCAAAGGCGGAGCCGGAGTAGTCTATCGTGGATCAATGCCAGACGGCTCCGTCGTGGCTATTAAACTGTTATTAGGAAGCGGCCGGAACGACCACGAACTCTCTCAACCCTCCGATGCAGCCTCAGTATTAGCTGTTGTAGACTCCCGCCTCACAGAATACCCACTCCAAGCCGTAATTCATCTCTTCAAAATAGCCATGATGTGCGTTGAAGAAGACAGCTCTGCAAGGCCAACCATGAGAGAAGTTGTTCACATGCTCTCTAATCCACCAAGGTCTGCCCCTACTCTAATCAATCTCTAA 2382 44.46 MKKRSIDPFVCRLSSFFIFLFYASLCFANRDMEALLKIKSSIIGPGRSELGDWEPSPTSSPSAHCDFSGVTCDGDNRVVALNVSNLRLFGSIPAEIGMLEKIENLTLVSNNLTGKLPLEMAKLTSLKFLNLSNNAFRDNLTAVITVGMTELEVFDIYNNNFFGLLPVEFVKLKKLKHLDLGGCYFTGQIPAVYSEMQSLEFLSVRGNMLTGRIPASLGRLKNLRYLYAGYFNHYDGGIPAEFGSLSSLELIDLANCNLTGEIPPSLGNLKHLHSLFLQVNNLTGRIPSELSGLISLKSLDLSLNELTGEIPSSFVELQNLTLINLFNNKLHGPIPGFVGDFPHLEVLQLWNNNFTLELPENLGRNGKLFLLDVATNHLTGLIPPDLCNGRLKTLILLDNYFFGPIPEKLGRCDSLTKIRIAGNFFNGTVPAGFFNFPALEQLDISNNYFSGALPSQMSGEFLGSLLLSNNHITGDIPAAIKNLENLQVVSLEHNQFTGNLPKEIFQLNKLLRINISFNNISGEIPHSVVQCTSLTLVDLSENYLVGLIPRGISKLKILSVLNLSRNHLTGQIPNEIRSMMSLTTLDLSYNNFFGKIPSGGQFSVFNVSAFIGNPNLCFPNHGPCASLHKNLKYVKLIIPIVAIFIVLLCVLAALYLRKRKKIQKSKAWKLTAFQRLNFKAEDVLECLKDENIIGKGGAGVVYRGSMPDGSVVAIKLLLGSGRNDHELSQPSDAASVLAVVDSRLTEYPLQAVIHLFKIAMMCVEEDSSARPTMREVVHMLSNPPRSAPTLINL* 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3632517 3636810 + Chy4G071240.1 Chy04g00406 224305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00406 793 Gene3D Ribonuclease Inhibitor 233 337 IPR032675 -
Chy04g00406 793 Gene3D Ribonuclease Inhibitor 146 232 IPR032675 -
Chy04g00406 793 Gene3D Ribonuclease Inhibitor 27 145 IPR032675 -
Chy04g00406 793 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 729 787 - -
Chy04g00406 793 SUPERFAMILY Protein kinase-like (PK-like) 678 717 IPR011009 -
Chy04g00406 793 Gene3D Phosphorylase Kinase; domain 1 652 738 - -
Chy04g00406 793 Pfam Leucine Rich Repeat 247 269 IPR001611 GO:0005515
Chy04g00406 793 Pfam Leucine Rich Repeat 174 190 IPR001611 GO:0005515
Chy04g00406 793 PANTHER UNNAMED PRODUCT 729 787 - -
Chy04g00406 793 SUPERFAMILY L domain-like 390 622 - -
Chy04g00406 793 Pfam Leucine rich repeat 464 520 IPR001611 GO:0005515
Chy04g00406 793 Pfam Leucine rich repeat 271 330 IPR001611 GO:0005515
Chy04g00406 793 Pfam Leucine rich repeat 533 592 IPR001611 GO:0005515
Chy04g00406 793 SMART LRR_typ_2 436 460 IPR003591 -
Chy04g00406 793 SMART LRR_typ_2 293 317 IPR003591 -
Chy04g00406 793 SMART LRR_typ_2 483 507 IPR003591 -
Chy04g00406 793 SMART LRR_typ_2 341 365 IPR003591 -
Chy04g00406 793 SMART LRR_typ_2 123 147 IPR003591 -
Chy04g00406 793 SMART LRR_typ_2 148 171 IPR003591 -
Chy04g00406 793 SMART LRR_typ_2 555 579 IPR003591 -
Chy04g00406 793 SMART LRR_typ_2 196 220 IPR003591 -
Chy04g00406 793 SMART LRR_typ_2 245 269 IPR003591 -
Chy04g00406 793 PANTHER UNNAMED PRODUCT 10 725 - -
Chy04g00406 793 SUPERFAMILY RNI-like 81 425 - -
Chy04g00406 793 Pfam Leucine rich repeat N-terminal domain 28 73 IPR013210 -
Chy04g00406 793 Gene3D Ribonuclease Inhibitor 338 632 IPR032675 -
Chy04g00406 793 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 10 725 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00406 K00924 E2.7.1.-; kinase [EC:2.7.1.-] - csv:101221360 1401.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00797 Chy-Chr2:4989498 Chy04g00406 Chy-Chr4:3632517 0 dispersed
Chy02g00798 Chy-Chr2:5001862 Chy04g00406 Chy-Chr4:3632517 0 dispersed
Chy04g00406 Chy-Chr4:3632517 Chy04g01123 Chy-Chr4:17356339 2.48E-142 dispersed
Chy04g00406 Chy-Chr4:3632517 Chy05g01256 Chy-Chr5:16912310 4.86E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1142 . . . . . . . . . . Cma01g01981 Cma09g00096 Car01g01552 . . Cpe06g00058 . . . . . . . . . . . . . . . . . Cone17ag1415 . . Csa03g04290 Chy04g00406 . . . . . . . . . . Cmo01g02039 Cmo09g00093 . . . Car09g00084 . Cpe02g00064 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000215 4 5 5 3 5 6 9 6 6 3 6 6 7 4 3 9 5 3 4 6 4 6 6 6 7 5 4 0 3 3 149
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00406 Chy_Chr04 FPKM 4.626362 5.126702 35.896526 35.933502 6.388111 4.834701 5.975018 2.789468 4.291068 3.831692