Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00407 ATGATGACACTTGAAGACTTCTTCACCTTGACTGAAATAAAAAATGGGCTTACGGCCCCATGTAGAGTTGAGGAATTAATCAATGTTATGCAAAAGGAGAAGGATTGTTTTGTGAAGAATGTTAGTGATGCAACTCGGCATTGGGCTGCTGTTGCGGGTGCTATTGCTGCTACGGAGAATAAAGATTGTCTTGATCTTTTTATCCAATTAGATGGACTTAGCTTCATTCAAAGATGGCTTAAGGATGCTCAAAAGTTTAGTAATGATACAAATGATAGCACCGTGGAAGAGTCTATCATTGTTTTGTTACAAGCACTTGAAAAGTTACATATAACTGCTGAGAAATCTATTTCTTCTGGGATTTTGTTTACTGTTAAGGGTCTTCATGAAAACACTGACCATGGAAAATCAAGGTTTGGGAAAGAATTGAGTGTCCTTCTTGATAGGTGGATGCAGGAGATTAATGATAAAGATTTGCTTCGAGATGCAGAAAACATTGTACATTTTGATGAAGAGAAGTTAAATCTTGTTGGTGGAGCAGGAAGGTCATCTCCTTCAGGTGCATCTGTTTCAAGAGAATTATCCGGTGATGGACGACAAACAGCAGAACCTGTTGGGGACAAGATATTATCCTCTGGAACCCCTGATGCACTTCACCCAGATAAGATCGAGGATTCAAAGGTTCAATCTCCCAGAAACGAGCTCAACTCTCATTCAATTTCTGGAAATTCAGTTGTGAAAGATAGATCTCCAGATTTAACAACGAACTCTCCTGTTATGTTGGCGCCAAGTGAGGATGTTTTGAAGAAGGATGAAACATCTCTATGTTCTGTTGGAGGAGGAGCCCCAGTTAGTGTGGGTTGTAGCTTTCCAGCTGTGAGGGAAGGCACCGATAATGAACAGTTAACTGGTTTGAAAAAGTGTAATGAGTCACAAGAGCTTGAAAACCAAGTGAATAAGATTGATGGCTCTTCTGGTAGGTCATGCGTGTCAGAGAAATCAGATACCTCTTCACATTCTCCCGTGCAGGATCCTGGAACTGTTTTGGAAGGTTTTGATGCTGCAATTGGTGAAGAGTCTGCTAAAGAAGCTCCAGCTCAACAAGATAATGACGGTCTTGACGATGCTGGTGCCTGTCAGCGTAGTTCTAGTCTAGATAGTGAGAGAGTTTCCACATTAGAATCAGCAAGTGGGATGTCTGATAAAAAGACAAATTATGGTAGCATGCCCGTGTTCAAACCTACAGGCAAAGATGCTGACCGCTATCTAAATACTTTTCGGGATTTGTCTATGAATGGGAGTCTAATAGGAAAACTTGAGGAGCGTGGACCTTCTTTTTCCAGGATGGAAGACTTTGGTGGAATGAAGAGAGACAGGCAACGTCGCAGAAAGGAAGATGACGGTGGAATGAATAATTCTATTTTTTCCAAACCGAAATTAAATCCCAAAACTTCAAGTATAATTGATAATAGGTCAGACATGGAACTTGATTATGGGATAGTTGATGCTCTGGAGGTTGCTCGGCAAGTTGCTCAAGAAGTAGAAAGAGAAGTGGTGGAATATAGAGAGCCATCCTGCAGCTCTTCTTCTGACAAAGTTTCTGATGGTGGAATCAGGCAGCTGGGTAAACCAGATACCATGACTGAAAAACAGGATCTGCCAGCTGATCTACAAGAAAGGGAGGTCCAATCTGCAAAAAGTCACATTGCTGAATCATATTCTGATGCAGAGACATGTTTAACCGATCCAGATAATTTAGATACCCAACCAGAAAATTTGAATGAAATGGAATCCTCCATGGTCACAGAAGCAGCTCGAGGGGCAGATGCAAGTACAGGAAAAGAATATTGTGAAATTGATCTAAATCAAGATGTATTTAATGATGATGCAGAGCAGATAGCAACTCCAGTGTCTATACCTGTATCTGTTATCTCTGTTTCCAGACCAGCTGCTTCTTCTGGGTTGCCTCTAACACCTTTACAGTTTGAAGGGGCGCTTGGATGGAGAGGCTCTGCAGCTACTAGTGCTTTCCGGCCTGCTTCCCCACGTAAAGTTCCTGATAGCGATAGAACCTTTTCAAGTGGGGGAAATTCTGATAGTTCAAAGCAGAGGCAAGATTTTCTTGACATTGATTTGAATGTGGCTGAGACTGGAGAAGAAACCAGGAAGCAAAACCTAGGGTCATCTTTCCCACAACCCGGAGAGTTTTTAGTTGAAAGTGGACCAAGAAGATCTGGGGGATTAAAGCTGGATCTTAACTGTGTCGGTGACGATGTTGATGCTCCAGCATCGGATTTGAGAATTGAGGGACTCTTCAACAACCAGAATAGCTACAGTGCTTCTCCTGCCTGCTCGTCATCGTCAATGCAACCTTTGGTAAGGAATATTGATTTGAATGATAGGCCATATGTTCAAGGTGATGCCCCAGATCAAGGTCCTGGTAAGTATGGTCAAAATGCAAGTGCTTATGGACGGCCAAATTCGGATGCTTCTGTTATATCCATTATGGGTACAAAGGTGGAAGTGAGTAGAAAAGATTTTCCTTTTCATGCTTCACCGTTGCCCAATGGCAGAACTGTTGAGCCCACTGGAATGGGTGCTACTTTGGCAAGGACAGGAGATATACTAGGGATGAGTTCTGCAGTTTCTTACCATCAGACTCCTTTTATTGGTTACAATGGATTGACACCGGGGCCAACCATTTCATTCTCGACCATGTATGAACCTGGTGGTTCAATGCCTTACATGGTTGATTCAAGAGGAGCTGCTGTTATGCCTCAATTCATGGGCCCTATGTCAGCTGTTCCCCCTTCCTCTTACTCGCACCCGCCATTCATCATGGGCATGGCAGATGCACAGCTAACTCCAAATGGCATTGCTCACTCGCGTCCGAAATTCGATTTGAATTCTGGATTAAGTGATTCTGGGGGTTTAAAGCAGCTTCTGTTCCCCGGCCATCTTCGATCGGTGGAAGAGCAGTTGAGACAACCCTCAAGTTCTGGAGTTGGTACAAAAAGGAAAGAACCAGATGGTCCTGACGGTGGGTGGGAAAGTTATTTCCTAAGCTATAAACATCAGCAGCCTCCATGGAAACAGTAA 3099 43.08 MMTLEDFFTLTEIKNGLTAPCRVEELINVMQKEKDCFVKNVSDATRHWAAVAGAIAATENKDCLDLFIQLDGLSFIQRWLKDAQKFSNDTNDSTVEESIIVLLQALEKLHITAEKSISSGILFTVKGLHENTDHGKSRFGKELSVLLDRWMQEINDKDLLRDAENIVHFDEEKLNLVGGAGRSSPSGASVSRELSGDGRQTAEPVGDKILSSGTPDALHPDKIEDSKVQSPRNELNSHSISGNSVVKDRSPDLTTNSPVMLAPSEDVLKKDETSLCSVGGGAPVSVGCSFPAVREGTDNEQLTGLKKCNESQELENQVNKIDGSSGRSCVSEKSDTSSHSPVQDPGTVLEGFDAAIGEESAKEAPAQQDNDGLDDAGACQRSSSLDSERVSTLESASGMSDKKTNYGSMPVFKPTGKDADRYLNTFRDLSMNGSLIGKLEERGPSFSRMEDFGGMKRDRQRRRKEDDGGMNNSIFSKPKLNPKTSSIIDNRSDMELDYGIVDALEVARQVAQEVEREVVEYREPSCSSSSDKVSDGGIRQLGKPDTMTEKQDLPADLQEREVQSAKSHIAESYSDAETCLTDPDNLDTQPENLNEMESSMVTEAARGADASTGKEYCEIDLNQDVFNDDAEQIATPVSIPVSVISVSRPAASSGLPLTPLQFEGALGWRGSAATSAFRPASPRKVPDSDRTFSSGGNSDSSKQRQDFLDIDLNVAETGEETRKQNLGSSFPQPGEFLVESGPRRSGGLKLDLNCVGDDVDAPASDLRIEGLFNNQNSYSASPACSSSSMQPLVRNIDLNDRPYVQGDAPDQGPGKYGQNASAYGRPNSDASVISIMGTKVEVSRKDFPFHASPLPNGRTVEPTGMGATLARTGDILGMSSAVSYHQTPFIGYNGLTPGPTISFSTMYEPGGSMPYMVDSRGAAVMPQFMGPMSAVPPSSYSHPPFIMGMADAQLTPNGIAHSRPKFDLNSGLSDSGGLKQLLFPGHLRSVEEQLRQPSSSGVGTKRKEPDGPDGGWESYFLSYKHQQPPWKQ* 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3648687 3651785 + Chy4G071250.1 Chy04g00407 224306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00407 1032 MobiDBLite consensus disorder prediction 360 412 - -
Chy04g00407 1032 MobiDBLite consensus disorder prediction 687 703 - -
Chy04g00407 1032 MobiDBLite consensus disorder prediction 182 196 - -
Chy04g00407 1032 MobiDBLite consensus disorder prediction 445 470 - -
Chy04g00407 1032 ProSiteProfiles TFIIS N-terminal domain profile. 74 157 IPR017923 -
Chy04g00407 1032 MobiDBLite consensus disorder prediction 521 591 - -
Chy04g00407 1032 MobiDBLite consensus disorder prediction 988 1032 - -
Chy04g00407 1032 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 21 159 IPR035441 -
Chy04g00407 1032 MobiDBLite consensus disorder prediction 545 566 - -
Chy04g00407 1032 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 2 1031 - -
Chy04g00407 1032 MobiDBLite consensus disorder prediction 232 259 - -
Chy04g00407 1032 MobiDBLite consensus disorder prediction 316 348 - -
Chy04g00407 1032 MobiDBLite consensus disorder prediction 719 742 - -
Chy04g00407 1032 MobiDBLite consensus disorder prediction 673 706 - -
Chy04g00407 1032 MobiDBLite consensus disorder prediction 177 259 - -
Chy04g00407 1032 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 2 1031 - -
Chy04g00407 1032 MobiDBLite consensus disorder prediction 445 487 - -
Chy04g00407 1032 MobiDBLite consensus disorder prediction 316 344 - -
Chy04g00407 1032 MobiDBLite consensus disorder prediction 380 404 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00407 - - - csv:101221601 1943.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00407 Chy-Chr4:3648687 Chy04g01484 Chy-Chr4:21497553 1.90E-09 dispersed
Chy04g00407 Chy-Chr4:3648687 Chy02g02561 Chy-Chr2:28855542 5.05E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1137 . Blo12g00881 . . . . Bma04g00250 Bma01g02376 . . Cma01g01979 Cma09g00097 Car01g01551 . . Cpe06g00060 . . . . . . . . . . . . . . . . . Cone17ag1414 Cone20ag0069 Lsi04g01755 Csa03g04289 Chy04g00407 . . . . . . . . . Sed01g2483 Cmo01g02038 Cmo09g00094 . . . Car09g00085 . Cpe02g00065 Bhi09g02076 Tan01g5035 Cmetu04g3193 . Hepe01g1606 Mch11g0106 . Cla05g01862 Cam05g1991 Cec05g2003 Cco05g2061 Clacu05g1983 Cmu05g1864 Cre05g1988 . . . Cme04g00459
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008019 0 1 1 2 0 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00407 Chy_Chr04 FPKM 35.284599 40.832188 24.757799 24.255205 22.259388 21.223928 23.059778 38.441452 39.159157 38.319534