Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00408 AGGCACAAATCATTTGGAGTTTCATTTTGTAATAAATAAATAAATAAATAAATCAGGATGGGCCCGGGTCCAGGCCCACTGAGCATGAAGCTAGAAAGCTCCGTCGTCCTTCCTCTGCTTCTTCTATAAATACTCCATCTTCATTCCTTCATTACGAACCTCACTTCAATTCCCTCTGTTTCTCTCTTCCCTAACAATACAAACTTAAAACCTCCACCATTTCTCATCTCTTCTTCAACTCTGCATTCAATGTCTACACAAATTTCATTTTTATTATATCTTCTACCAATCCTAACTTCACTCTCAGGAGTATTCTCCACCACTTTCAGCATAGTAAACCAATGTGATTACACAGTTTGGCCCGGAATCCTCTCCAACGCCGGAGTTTCACCACTTCCCGTCACCGGCTTCGTCCTCGCCGCCGGTGAGTCCAAAACCATCTCCGCTCCCGCCTCTTGGGGAGGCCGATTCTGGGGCCGAACCCACTGTTCACAAGACTCCACCGGTAAATTCTCTTGCCTCACCGGAGATTGCGGCTCTGACAAAGTCGAATGTACCGGAAACGGGGCGAAACCACCGGCAACTCTGGCTGAGTTCACTCTCGACGGCGCCGGAGGACTTGATTTCTTCGACGTGAGTTTGGTGGACGGTTACAATATCCCTATGTTGGTTGTCCCACAAGGCGGCACCGGCGAGAAATGCATGAGCACGGGATGCGTTGTGGATTTAAACGACGCTTGTCCTCAGGAGCTGAAGGTTACGAGCGTTGAGGGCGGTGATAACGTCGCGTGTAAAAGCGCGTGTGAAGCATTTAACCAACCGCAGTATTGTTGTAGTGGCGAGTTCGGGAGTCCAGATACTTGTAAACCTTCCGCGTACTCGCAGGTGTTCAAAAGCGCTTGCCCACGAGCATACAGCTACGCCTACGATGACAAAACAAGCACGTTTACATGTGCCGACGCTGATTATATTATGACATTCTGCCCTTCACCCAACACTAGTCAGAAAGCAACGGATAATCACAACACAAAGACACCGGCGATCAACGGCGGCAACGGTACAATGGTATACGAAGGGGCTGCGTATGATTTTAGCGGCGCGTCGACAACCACGCTCCGTCATATTCTAGGGGTAGTCGTTGCGACGGTGGGAATTCTTCAAATTCGGCAACTCTTTTGAATGACCGTAGTTGGAGGAGGAGTTTCTGCCCAATTTTTCCTGGAGGGTAGGTGACACGTGGAGAGTGGAGCCCATAGGATTGAGTTTGATTGGTTGAAATGGGATGATGGGCTAAGTGGGTGGGCCGGGCCCATAATTAGGGCCCAGATGATGTGGATGTGAGTCATGATTGAAAAGGCTGAACCGCACAAGTTAATAGAGGGGGAAGCCAACCAATCCACCACTTTCTTCTACGCCAAAGCTGACAGAGAAGACGGAATTTTTTAAAGAATACTTTAGGAATTCTTTTAAAGGATTATTTATTATTAATTATTATGTTACGTTTATTCTTTATAATTAGTTGTAACAAGGAACAAAATAATGATATTGGGATTCATTTGTTGGTATTGGGGGACAGAATTCAATATTGTTAAATTAAAGTTATTATTCTTATGATTGAAATTCTTAATTAATTATGTTTTATGTCACATTCTAATAGTGCTGTAAAAATACATAAAAACGAAATTGATGATTTTAGTCGACGTACCACAACCAATGTGTCACGTTCCGTTAAAAAAACTCCAAAATTATTTATATTTACACATAGAACGAACGTCTTAAATCAAATAGAAACAAAGTGAGATGGCCGAATCTATTATTTATCAATCTTTTGCTTGTCCATTTCATATTCTATGGATTTCGGACGGATATAAAAGATCGTAAATTGACCGACTTGACGGGGGAAAATGGAAACGTGTATTCAGCCCAAGCAAACTTGCAATTGCATTATAGTAGGCAAGCAAGGCAATTTGGCCAATGATTTTGGGCACTTTCCTCAATTAAATCTTTATGTGCAAGCAAGAAAAAAAAAGCAAAAAAATGATAAATGTAACCTAATTTAGAAGATATAAGTATGACCTTTTT 2082 42.84 RHKSFGVSFCNK*INK*IRMGPGPGPLSMKLESSVVLPLLLL*ILHLHSFITNLTSIPSVSLFPNNTNLKPPPFLISSSTLHSMSTQISFLLYLLPILTSLSGVFSTTFSIVNQCDYTVWPGILSNAGVSPLPVTGFVLAAGESKTISAPASWGGRFWGRTHCSQDSTGKFSCLTGDCGSDKVECTGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGTGEKCMSTGCVVDLNDACPQELKVTSVEGGDNVACKSACEAFNQPQYCCSGEFGSPDTCKPSAYSQVFKSACPRAYSYAYDDKTSTFTCADADYIMTFCPSPNTSQKATDNHNTKTPAINGGNGTMVYEGAAYDFSGASTTTLRHILGVVVATVGILQIRQLF*MTVVGGGVSAQFFLEGR*HVESGAHRIEFDWLKWDDGLSGWAGPIIRAQMMWM*VMIEKAEPHKLIEGEANQSTTFFYAKADREDGIF*RIL*EFF*RIIYY*LLCYVYSL*LVVTRNKIMILGFICWYWGTEFNIVKLKLLFL*LKFLINYVLCHILIVL*KYIKTKLMILVDVPQPMCHVPLKKLQNYLYLHIERTS*IK*KQSEMAESIIYQSFACPFHILWISDGYKRS*IDRLDGGKWKRVFSPSKLAIAL**ASKAIWPMILGTFLN*IFMCKQEKKSKKMINVT*FRRYKYDLF 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3652658 3655338 - Chy4G071260.1 Chy04g00408 224307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00408 674 SMART tha2 106 326 IPR001938 -
Chy04g00408 674 SUPERFAMILY Osmotin, thaumatin-like protein 104 327 IPR037176 -
Chy04g00408 674 Gene3D Thaumatin 104 326 IPR037176 -
Chy04g00408 674 Pfam Thaumatin family 110 326 IPR001938 -
Chy04g00408 674 PRINTS Pathogenesis-related protein signature 205 221 IPR001938 -
Chy04g00408 674 PRINTS Pathogenesis-related protein signature 105 117 IPR001938 -
Chy04g00408 674 PRINTS Pathogenesis-related protein signature 153 164 IPR001938 -
Chy04g00408 674 PRINTS Pathogenesis-related protein signature 316 325 IPR001938 -
Chy04g00408 674 ProSiteProfiles Thaumatin family profile. 103 326 IPR001938 -
Chy04g00408 674 PANTHER BNAA02G17480D PROTEIN 88 352 - -
Chy04g00408 674 CDD TLP-PA 105 325 - -
Chy04g00408 674 PANTHER OS03G0233200 PROTEIN 88 352 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g01376 Chy04g00408 CCT
Chy03g01376 Chy04g00408 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01379 Chy-Chr3:16605922 Chy04g00408 Chy-Chr4:3652658 5.20E-135 dispersed
Chy04g00408 Chy-Chr4:3652658 Chy06g02234 Chy-Chr6:26443876 8.54E-114 dispersed
Chy04g00408 Chy-Chr4:3652658 Chy04g00409 Chy-Chr4:3653561 0 tandem
Chy09g00099 Chy-Chr9:839543 Chy04g00408 Chy-Chr4:3652658 4.80E-80 transposed
Chy10g00970 Chy-Chr10:15190106 Chy04g00408 Chy-Chr4:3652658 6.02E-85 transposed
Chy03g01376 Chy-Chr3:16597191 Chy04g00408 Chy-Chr4:3652658 4.58E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00408 - - csv:101214136 624.009