Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy04g00409 | ATGTCTACACAAATTTCATTTTTATTATATCTTCTACCAATCCTAACTTCACTCTCAGGAGTATTCTCCACCACTTTCAGCATAGTAAACCAATGTGATTACACAGTTTGGCCCGGAATCCTCTCCAACGCCGGAGTTTCACCACTTCCCGTCACCGGCTTCGTCCTCGCCGCCGGTGAGTCCAAAACCATCTCCGCTCCCGCCTCTTGGGGAGGCCGATTCTGGGGCCGAACCCACTGTTCACAAGACTCCACCGGTAAATTCTCTTGCCTCACCGGAGATTGCGGCTCTGACAAAGTCGAATGTACCGGAAACGGGGCGAAACCACCGGCAACTCTGGCTGAGTTCACTCTCGACGGCGCCGGAGGACTTGATTTCTTCGACGTGAGTTTGGTGGACGGTTACAATATCCCTATGTTGGTTGTCCCACAAGGCGGCACCGGCGAGAAATGCATGAGCACGGGATGCGTTGTGGATTTAAACGACGCTTGTCCTCAGGAGCTGAAGGTTACGAGCGTTGAGGGCGGTGATAACGTCGCGTGTAAAAGCGCGTGTGAAGCATTTAACCAACCGCAGTATTGTTGTAGTGGCGAGTTCGGGAGTCCAGATACTTGTAAACCTTCCGCGTACTCGCAGGTGTTCAAAAGCGCTTGCCCACGAGCATACAGCTACGCCTACGATGACAAAACAAGCACGTTTACATGTGCCGACGCTGATTATATTATGACATTCTGCCCTTCACCCAACACTAGTCAGAAAGCAACGGATAATCACAACACAAAGACACCGGCGATCAACGGCGGCAACGGTACAATGGTATACGAAGGGGCTGCGTATGATTTTAGCGGCGCGTCGACAACCACGCTCCGTCATATTCTAGGGGTAGTCGTTGCGACGGTGGGAATTCTTCAAATTCGGCAACTCTTTTGA | 930 | 51.51 | MSTQISFLLYLLPILTSLSGVFSTTFSIVNQCDYTVWPGILSNAGVSPLPVTGFVLAAGESKTISAPASWGGRFWGRTHCSQDSTGKFSCLTGDCGSDKVECTGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGTGEKCMSTGCVVDLNDACPQELKVTSVEGGDNVACKSACEAFNQPQYCCSGEFGSPDTCKPSAYSQVFKSACPRAYSYAYDDKTSTFTCADADYIMTFCPSPNTSQKATDNHNTKTPAINGGNGTMVYEGAAYDFSGASTTTLRHILGVVVATVGILQIRQLF* | 310 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 3653561 | 3655089 | - | Chy4G071270.1 | Chy04g00409 | 224308 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy04g00409 | 309 | SUPERFAMILY | Osmotin, thaumatin-like protein | 24 | 247 | IPR037176 | - | |
| Chy04g00409 | 309 | SMART | tha2 | 26 | 246 | IPR001938 | - | |
| Chy04g00409 | 309 | ProSiteProfiles | Thaumatin family profile. | 23 | 246 | IPR001938 | - | |
| Chy04g00409 | 309 | PANTHER | OS03G0233200 PROTEIN | 8 | 270 | IPR001938 | - | |
| Chy04g00409 | 309 | PRINTS | Pathogenesis-related protein signature | 25 | 37 | IPR001938 | - | |
| Chy04g00409 | 309 | PRINTS | Pathogenesis-related protein signature | 73 | 84 | IPR001938 | - | |
| Chy04g00409 | 309 | PRINTS | Pathogenesis-related protein signature | 125 | 141 | IPR001938 | - | |
| Chy04g00409 | 309 | PRINTS | Pathogenesis-related protein signature | 236 | 245 | IPR001938 | - | |
| Chy04g00409 | 309 | CDD | TLP-PA | 25 | 245 | - | - | |
| Chy04g00409 | 309 | Pfam | Thaumatin family | 30 | 246 | IPR001938 | - | |
| Chy04g00409 | 309 | PANTHER | BNAA02G17480D PROTEIN | 8 | 270 | - | - | |
| Chy04g00409 | 309 | Gene3D | Thaumatin | 24 | 246 | IPR037176 | - | |
| Chy04g00409 | 309 | PIRSF | PR5 | 1 | 282 | IPR001938 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Chy03g01379 | Chy04g00409 | CCT | |
| Chy03g01379 | Chy04g00409 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy04g00409 | Chy-Chr4:3653561 | Chy11g00276 | Chy-Chr11:2543293 | 2.55E-119 | dispersed | |
| Chy09g00099 | Chy-Chr9:839543 | Chy04g00409 | Chy-Chr4:3653561 | 3.10E-84 | dispersed | |
| Chy10g00970 | Chy-Chr10:15190106 | Chy04g00409 | Chy-Chr4:3653561 | 2.73E-88 | dispersed | |
| Chy04g00408 | Chy-Chr4:3652658 | Chy04g00409 | Chy-Chr4:3653561 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy04g00409 | - | - | csv:101214136 | 624.009 |