Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00417 ATGGCACTTCCTAAAATCATCGCCTCTCTTCTTGCGTCCTTTCTTCTCGTTCTTTGTTTTGTTGAAGCTGATGTTCAGATGGGCGTTGGTGTTGCAGCTAGTAGTCCCACTAAGACTCAAAATATTGATTGTGGAGGAGCTTGTGCATCGAGGTGCAAATTATCATCAAGGCCGAACTTGTGCCATAGGGCATGTGGGACGTGCTGTGCACGTTGCAGCTGTGTGCCGCCGGGCACTTCCGGAAACTATGAGGCTTGCCCTTGCTACGCTACACTGACCACTCACGGCGGCCGGCGAAAGTGTCCTTAA 309 51.13 MALPKIIASLLASFLLVLCFVEADVQMGVGVAASSPTKTQNIDCGGACASRCKLSSRPNLCHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP* 103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3702902 3703369 + Chy4G071350.1 Chy04g00417 224316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00417 102 PANTHER SNAKIN-2-LIKE 6 102 - -
Chy04g00417 102 Pfam Gibberellin regulated protein 43 102 IPR003854 -
Chy04g00417 102 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 6 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00417 - - - csv:101215341 208.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00112 Chy-Chr1:740259 Chy04g00417 Chy-Chr4:3702902 7.66E-07 dispersed
Chy03g01576 Chy-Chr3:17838697 Chy04g00417 Chy-Chr4:3702902 7.65E-12 dispersed
Chy04g00417 Chy-Chr4:3702902 Chy12g01290 Chy-Chr12:17386600 8.21E-19 dispersed
Chy04g00417 Chy-Chr4:3702902 Chy07g01701 Chy-Chr7:20817603 3.63E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1108 . . Bda01g00486 . Bpe02g00350 Bpe04g00248 Bma04g00248 . . Cmo12g00361 Cma01g01971 Cma09g00103 Car01g01542 Car12g00388 . . Cpe07g00368 Bhi04g00154 . . . . . . Cla08g01426 Cam08g1906 Cec08g1482 . Clacu08g1597 . Cre08g1382 Cone4ag1971 Cone7ag1888 . . Lsi04g01745 Csa03g04280 Chy04g00417 Cme03g01885 . . . . . . . . . Cmo01g02029 Cmo09g00099 Cma12g00410 . . Car09g00093 . Cpe02g00071 Bhi09g02089 Tan01g5017 . . Hepe01g1614 Mch11g0117 . Cla05g01870 Cam05g2000 Cec05g2013 Cco05g2070 Clacu05g1992 Cmu05g1873 Cre05g1997 Lsi08g01325 . . Cme04g00470
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000331 5 7 1 4 7 5 5 5 5 2 4 5 4 4 5 4 5 4 4 5 4 5 5 3 4 3 5 6 8 4 137
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00417 Chy_Chr04 FPKM 22.429424 19.988924 21.797276 21.662922 23.16637 21.272808 26.280228 13.460192 12.341969 16.914656