Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00427 ATGCAGAGCCATTCACCTCGTTCCCTTCGCTCCTCGATCAAGTGCTCGTTGATCGACCCCGATGGTGGGGTTGTCGTCGACTTGGTTGTGCCTGAGAGTGAAAGGGCCTCGAGGGTTTTGGAGGCCGAGCCATTGCCGAAGGTTAAATTGACCCAAATTGATCTAGAATGGGTCCATGTCATTAGTGAAGGATGGGCGAGCCCGTTGAGAGGGTTCATGAGAGAAGATGAGTATTTGCAGAGTTTGCATTTCAATTGCATCAAAATTAAGGATGGGTCTTTTGTAAACATGTCGCTTCCTATTGTTCTTGCCATTGGCGACGATGTTAAGGACCAAATTGGGTCCTCATCTAATGTGGGGTTGCTTGGTCCCAATGGAGATTTGGTTGGTATTCTTCGCAGCATCGAGATATTCAAGCATAATAAGGAAGAGAGGATAGCTAGAACTTGGGGAACAACTGCACCTGGGTTACCATATGTTGATGAGGTCATTACAAATGCTGGGAACTGGCTTCTTGGTGGAGATCTTGAAGTAATAAACCCCATCAAATACAATGATGGACTTGATCATTATAGGCTGTCTCCGAAACAACTTCGGCAAGAGTTCAATAGGCGTCAGGCCGATGCTGTTTTTGCCTTTCAATTGAGAAACCCTGTACATAATGGTCATGCTTTGTTGATGAATGATACACGAAAGCGACTTCTAGATATGGGTTACAAGAATCCAATTCTATTGCTTCATCCTTTGGGAGGTTTCACAAAAGCCGATGATGTGCCATTGGATGTTCGAATGGAGCAACATAGCAAGGTTTTAGAAGATGGAATCCTTGACCCTGAAACGACCATCGTTTCCATTTTCCCATCACCAATGCATTACGCTGGTCCAACCGAAGTACAATGGCATGCTAAAGCAAGGATCAATGCAGGTGCAAATTTTTACATTGTTGGTCGAGATCCTGCTGGAATGGGTCACCCAACAGAGAAGAGAGATTTATATGATCCAGACCATGGCAAGAAGGTCTTAAGTATGGCCCCTGGCCTTGAGAAGCTAAACATATTGCCCTTCAAGGTAGCAGCATACAATACTGTTGCGAAGAAGATGGCATTCTTCGACCCTGCTCGTGCTAAAGATTTCCTCTTCATCTCTGGAACAAAGATGCGAACATACGCAAGGACAGGTGAGAATCCTCCTGATGGTTTCATGTGCCCTGGTGGATGGAAAGTGTTGGTCAATTATTACGAGAGCTTGCAGGCGGAAGAGGCGTCACCACAGCAGGCTGCATTGTCAGTTTAG 1293 45.63 MQSHSPRSLRSSIKCSLIDPDGGVVVDLVVPESERASRVLEAEPLPKVKLTQIDLEWVHVISEGWASPLRGFMREDEYLQSLHFNCIKIKDGSFVNMSLPIVLAIGDDVKDQIGSSSNVGLLGPNGDLVGILRSIEIFKHNKEERIARTWGTTAPGLPYVDEVITNAGNWLLGGDLEVINPIKYNDGLDHYRLSPKQLRQEFNRRQADAVFAFQLRNPVHNGHALLMNDTRKRLLDMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGILDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAPGLEKLNILPFKVAAYNTVAKKMAFFDPARAKDFLFISGTKMRTYARTGENPPDGFMCPGGWKVLVNYYESLQAEEASPQQAALSV* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3788692 3790957 + Chy4G071450.1 Chy04g00427 224326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00427 430 Pfam ATP-sulfurylase 190 411 IPR024951 GO:0004781
Chy04g00427 430 SUPERFAMILY PUA domain-like 20 184 IPR015947 -
Chy04g00427 430 Gene3D Sulfate adenylyltransferase 16 184 - -
Chy04g00427 430 TIGRFAM sopT: sulfate adenylyltransferase 20 410 IPR002650 GO:0000103|GO:0004781
Chy04g00427 430 Gene3D HUPs 185 418 IPR014729 -
Chy04g00427 430 CDD ATPS 45 412 IPR002650 GO:0000103|GO:0004781
Chy04g00427 430 Pfam PUA-like domain 18 180 IPR025980 -
Chy04g00427 430 PANTHER BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE 12 423 - -
Chy04g00427 430 PANTHER ENDOGLUCANASE 12 423 - -
Chy04g00427 430 SUPERFAMILY Nucleotidylyl transferase 190 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00427 K13811 PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase [EC:2.7.7.4 2.7.1.25] - csv:101217416 857.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00427 Chy-Chr4:3788692 Chy06g00534 Chy-Chr6:3628466 0 dispersed
Chy04g00427 Chy-Chr4:3788692 Chy05g00377 Chy-Chr5:4074431 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1086 Blo01g01591 . Bda01g00494 . Bpe02g00356 . . Bma01g02362 . . Cma01g01965 . Car01g01535 . . . . . . . . . . . . . . . . . . . . Cone17ag1393 Cone20ag0087 Lsi04g01731 Csa03g04268 Chy04g00427 . . . . . . . . . Sed01g2503 Cmo01g02023 . . . . . . Cpe02g00078 Bhi09g02099 Tan01g5005 Cmetu04g0401 . Hepe01g1625 Mch11g0129 . Cla05g01885 Cam05g2018 Cec05g2029 Cco05g2086 Clacu05g2009 Cmu05g1890 Cre05g2013 . . . Cme04g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000781 5 3 3 2 3 3 4 3 3 3 2 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 3 3 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00427 Chy_Chr04 FPKM 4.810954 5.247507 0.242417 0.671496 12.207096 11.239305 12.217131 0.137221 0.0 0.034296