Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00433 ATGGGCTCCGTGGAAGAGAAGCTCAAGACATCAGGGGGTTTGATTAATAACGCCCCACAGACTAACCTTCTCGACGAGATGAAGTTGTTGAAAGAAATGCAAGATCAATCAGGGGCCCGGAAGGCTATAAACTCCGAGCTGTGGCATGCTTGTGCCGGTCCTCTTGTTTCCTTGCCCCATGTGGGTAGTCTTGTTTATTACTTTCCTCAGGGACATAGTGAACAGGTGGCAGTTTCTACCAAGAGAACAGCAACCTCACAGATTCCAAATTATCCTAATCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAATGTTACCTTACACGCTGATAAAGATTCAGATGAAATCTATGCTCAAATGAGTCTTCAACCGGTGCTCTCTGAAAAAGATGTTTTTCTAGTTCCGGACTTCGGATTGAGGCCAAGTAAACACCCAAATGAGTTCTTCTGCAAAACTTTAACTGCCAGTGACACCAGCACACACGGTGGATTCTCAGTGCCACGCAGGGCTGCTGAAAAACTCTTTCCTCCATTGGATTACACAATGCAACCGCCAACTCAGGAGCTCATTGTCAGAGACCTGCATGACAATACCTGGACTTTTCGCCACATATATCGCGGGCAGCCGAAACGACACCTTCTCACAACTGGGTGGAGTCTATTCGTTGGAGCAAAGAGGCTTAGAGCAGGAGATTCTGTTCTTTTTATAAGGGATGAAAAGTCTCAGTTGCTTATTGGAGTGAGGCGTGCTAACCGGCAACAAACAACATTGCCATCATCGGTTCTATCTGCTGATAGTATGCATATTGGAGTTCTTGCTGCTGCGGCTCATGCTGCTGCCAATCGAAGTCCATTCACAATCTTCTACAACCCCAGAGCATGTCCTTCAGAATTTGTTATTCCTTTAGCCAAGTATCGCAAATGTGTATACGGTACTCAGCTTTCTGCAGGCATGAGGTTCGGGATGATGTTTGAAACAGAAGAATCCGGTAAACGTCGATATATGGGAACAATTGTTGGAATTAGCGATTTAGATCCACTTAGATGGCCAGGTTCCAAATGGCGAAATCTTCAGGTAGAGTGGGATGAGCCAGGATGCTGCGATAAGCAGAACAGGGTTAGTTCATGGGAAATAGAAACTCCAGAAAGTCTATTCATTTTTCCTTCTCTGACTTCGGGTCTTAAACGTCCATTACACGGTGGATTCTTGGGAGAAACTGATTGGGGAAGTCTGGTGAAGAGACCAATGCTTCGTGTTCCAGAAAATATACGTGGGGATCTTTCATATGCCCCAACATTATGCTCCGAACCACTGATGAAGATGCTACTGAGGCCTCAAATGGTTAACCTTAACGGAACCACCTTACAACAAGATTCAACTAACAATTTGGTCAAGATACAGGACATGAAGGACATGCAGAGTCCCAAAATGCAGCAGCTTATACCGACAGAAACTGCATCTCCCGGGAATCAAAATCAGCATCATCCAGGACCTGCACAATCTGATCCTATCAACCCAAATTCATCACCAAAAGCAAATGTACATGGAAAAGTGCACACCTCGGTGGCCATTGAAAGTGAAGCTCCAACTGCAGCTGATGGAGACAAGGCAAAATATGATCGTGACTTATCAGCCTCAACCAATCAATCCAATCCTTTGCCCCCCCCCGTTGGAGGTTGTGCAGAGGAAAAACTCACTGGTAACGAAGTGAATATGCAAACACTTGTAAACCAGCTTTCATTTGTGAACCAGAATCAGATTCCCATGCAGTTGCAATCCGTATCATGGCCGATGCAGCCTCAGCTTGAATCACTAATCCAACATCCACAACCAATCGACATGCCTCAGCCTGAGTATACGAATTCAAATGGTTTGATTTCATCTTTGGATGGCGATGGATGTTTGATTAACCCATCCTGTCTGCCTCTTCCTGGAGTAATGAGATCACCGGGAAATCTTTCCATGTTGGGATTGCAAGACTCCTCAACAGTCTTTCCTGAGGTTCTTAATTTTCCGTTACCTTCAACAGGCCAAGACATGTGGGACCCTCTTAATAATATAAGGTTCTCATCTCAAACCAATCATCTCGTCTCATTCTCTCATGCAGACGCATCTAACCTCAACTGTATGGCTAATGCAAATATTATGAGAGATGTTTCAGATGAAAGCAACAACCAAAGTGGGATATATAGTTGTTCTAACCTTGAAATGAGTAATGGTGGAAGTACTTTGGTTGATCATGCAGTTTCAAGTACCATTCTTGACGATTATTGCACATTGAAAGATGCTGACTTCCCACATCCTTCAGATTGCTTGGCTGGAAACTTCAGTTCGAGTCAAGATGTTCAGTCTCAGATTACCTCTGCTAGTTTAGGAGATTCTCAGGCTTTTTCCAGGCAAGAGTTTCATGATAATTCAGCTGGTACATCCTCATGCAATGTGGACTTTGATGAGGGCAGTCTTCTACAGAATGGTTCGTGGAAGCAAGTGGTACCGCCCTTGAGAACTTACACAAAGGTCCAGAAGGCAGGATCCGTTGGGAGATCTATTGATGTCACAAGTTTTAAGAACTACGACGAACTGTGCTCTGCTATTGAATGTATGTTTGGACTTGAAGGGTTGCTTAATGACCCAAGAGGCTCAGGATGGAAACTGGTATATGTGGATTATGAGAACGACGTCCTGCTTATTGGTGATGATCCCTGGGAGGAATTTGTTAGCTGTGTACGCTGCATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGCGAAGAGGGAATGAAGCTTCTCAATAGTGCTATGATGCAAGGCATCAATTGCCCCATGTCGGAAGGTGGGCGATCTTAA 2850 44.56 MGSVEEKLKTSGGLINNAPQTNLLDEMKLLKEMQDQSGARKAINSELWHACAGPLVSLPHVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQNVTLHADKDSDEIYAQMSLQPVLSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELIVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFIFPSLTSGLKRPLHGGFLGETDWGSLVKRPMLRVPENIRGDLSYAPTLCSEPLMKMLLRPQMVNLNGTTLQQDSTNNLVKIQDMKDMQSPKMQQLIPTETASPGNQNQHHPGPAQSDPINPNSSPKANVHGKVHTSVAIESEAPTAADGDKAKYDRDLSASTNQSNPLPPPVGGCAEEKLTGNEVNMQTLVNQLSFVNQNQIPMQLQSVSWPMQPQLESLIQHPQPIDMPQPEYTNSNGLISSLDGDGCLINPSCLPLPGVMRSPGNLSMLGLQDSSTVFPEVLNFPLPSTGQDMWDPLNNIRFSSQTNHLVSFSHADASNLNCMANANIMRDVSDESNNQSGIYSCSNLEMSNGGSTLVDHAVSSTILDDYCTLKDADFPHPSDCLAGNFSSSQDVQSQITSASLGDSQAFSRQEFHDNSAGTSSCNVDFDEGSLLQNGSWKQVVPPLRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGINCPMSEGGRS* 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3874087 3878510 + Chy4G071510.1 Chy04g00433 224332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00433 949 MobiDBLite consensus disorder prediction 482 515 - -
Chy04g00433 949 ProSiteProfiles PB1 domain profile. 835 919 IPR000270 GO:0005515
Chy04g00433 949 MobiDBLite consensus disorder prediction 482 560 - -
Chy04g00433 949 SMART B3_2 149 251 IPR003340 GO:0003677
Chy04g00433 949 CDD B3_DNA 148 249 IPR003340 GO:0003677
Chy04g00433 949 Gene3D - 147 250 IPR015300 -
Chy04g00433 949 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Chy04g00433 949 Pfam AUX/IAA family 879 922 IPR033389 -
Chy04g00433 949 Gene3D - 313 385 - -
Chy04g00433 949 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Chy04g00433 949 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Chy04g00433 949 SUPERFAMILY DNA-binding pseudobarrel domain 136 278 IPR015300 -
Chy04g00433 949 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 939 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy04g00433 949 SUPERFAMILY CAD & PB1 domains 837 914 - -
Chy04g00433 949 Gene3D - 832 924 - -
Chy04g00433 949 PANTHER AUXIN RESPONSE FACTOR 5 30 939 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00433 Chy-Chr4:3874087 Chy05g01480 Chy-Chr5:18553235 1.48E-37 dispersed
Chy04g00433 Chy-Chr4:3874087 Chy02g00116 Chy-Chr2:835963 6.96E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17813 PF02362 B3 1.10E-20 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00433 K14486 - csv:101216825 1908.26