Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00443 ATGGCTCGTGGGAAGATCCAGATCAAGAGAATAGAAAACCCTACAAACAGGCAAGTGACTTACTCCAAGAGACGCAACGGGCTGTTCAAAAAAGCCAACGAATTGACGGTTCTCTGCGATGCTAAAGTCTCCATTATCATGTTCTCCAGCACTGGAAAACTCCATGAGTATATCAGCCCTGCCACTTCGACTAAGGAGCTTTTCGATCAGTACCAGAAGACTTTAGGCGTTGATTTATGGATCACTCACTATGAGAGAATGCAAGACAATCTCAAGAAGCTCAAAGATATCAATCGAAATCTCCGAAGGCAGATTAGGCAGAGGATGGGGGAATGTCTGAATGATCTGAGTTTTGAAGAACTCCGATGTCTTGAGCAAGATATGGATAATGCTGTCAGGATCATCCGTGAACGAAAGTACCGGGTGATCTCAAACCAGATCGAAACACACAAGAAGAAGTTAAAGAGCGTAGGAGAAATACACAAGAGTCTTCTACAAGAGTTTGACATTGCAACAGAAGAAGATCCACATTATGGGCTGGTAGACAATGGAGGAGTAGGTGTAGGAATTGGAGGAGGAGATTATGAGTCAATTATGGGGTTCTCAGGTGCTGCCCATCCTCGCATTTTTGCATTGCGTCTCCAGCCCAACCACACCCACAGCAACCATCTTAATAATATTCACCTTCATCACCCTCCTCCTTCAGATCTCACTACCTATCCACTCCTTGAGTAG 735 44.63 MARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPATSTKELFDQYQKTLGVDLWITHYERMQDNLKKLKDINRNLRRQIRQRMGECLNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGVGVGIGGGDYESIMGFSGAAHPRIFALRLQPNHTHSNHLNNIHLHHPPPSDLTTYPLLE* 245
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 4033743 4037568 - Chy4G071610.1 Chy04g00443 224342
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00443 244 Coils Coil 84 111 - -
Chy04g00443 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy04g00443 244 PANTHER APETALA3 1 223 - -
Chy04g00443 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy04g00443 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy04g00443 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 223 - -
Chy04g00443 244 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Chy04g00443 244 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Chy04g00443 244 MobiDBLite consensus disorder prediction 223 244 - -
Chy04g00443 244 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy04g00443 244 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Chy04g00443 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy04g00443 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy04g00443 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy04g00443 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy04g00443 244 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00443 Chy-Chr4:4033743 Chy02g00197 Chy-Chr2:1342093 2.51E-30 dispersed
Chy04g00443 Chy-Chr4:4033743 Chy12g01158 Chy-Chr12:16520377 3.69E-31 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17814 PF01486 K-box 1.30E-22 No_clan Chy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00443 K09264 - csv:101218008 442.195