Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00444 AATAGGATTCTATTTATTTTGGAGGAAATTTCCCTTGTGGTTATGGCATCGTCCGCCTCTGAAATCACCATCCTCCAAATGGAATCGCCTGGAAACGGAAGCACCGGTTACGAGGAAAACATCGGCGTTTCAAGTCCGGGGGATGGGGATGGGATTTTATCGGCGGTGGAGACGATGCTGGTGAAATTCCATGCAGGGTATTTCCGAATCGGAATGTCGGTGGGTTGTCAAACGTTGCTATGGAAAATCCTAGCCGTAGAAAATGATGATTTGCTTCATCCCACGGTATTGTGGTGGATATTTGCAATCCCAGTAGTGGTGCTGGACGTGAAAATATATGGCCAATGGTTCACAAAAGGAAGGAGATTCCTATGCAGCGTTGCCAATCCCACCAGCCAACTCTCCGTCATCGGAAACTTGGTCGGGGCTCAGGCAGCCGGACGAATGGGGTGGAAGGAGAGTGCATTGTGCTTATTTTCTCTGGGGATCGTTCATTATTTAGTACTGTTTGTGACTCTTTATCAGCGGTTCTCTGGAGTCGACCGGCTTCCTTCCATGCTCCGCCCGGTGTTCTTTCTTTACATAGCAGCTCCAAGCTTCGCGAGCTTGGCTTGGGAATCCATTTCTGGGGCCTTTGATGCACCTTCCAAGATGCTCTTTTTTCTCTCCCTTTTTCTATTCACCGCCCTGGTTTGCAGGCCTTTACTATTCAAGAGGTCAATGAAAAGATTCACTATAGCATGGTGGGCGTTCTCCTTCCCAATCTCAGCACTTGCTATTGCCTCCATTCAATATCATCACCAAGTTCAAGCTCTCCCAGCCAAAATTCTAATGCTACTTCTTCTTACCATCTCAGTTTTTGTCGTCGTCTCCCTTGTCGCCGCTACTGTACTCAACTCTGGCTTACTCTTGCCTGATGACGACCCACTTTTCAATCCCTCCACTCAACGCAACTCAACTCTGGACGGATCTCATCGTCAAGAACCATTAACTTAA 996 47.79 NRILFILEEISLVVMASSASEITILQMESPGNGSTGYEENIGVSSPGDGDGILSAVETMLVKFHAGYFRIGMSVGCQTLLWKILAVENDDLLHPTVLWWIFAIPVVVLDVKIYGQWFTKGRRFLCSVANPTSQLSVIGNLVGAQAAGRMGWKESALCLFSLGIVHYLVLFVTLYQRFSGVDRLPSMLRPVFFLYIAAPSFASLAWESISGAFDAPSKMLFFLSLFLFTALVCRPLLFKRSMKRFTIAWWAFSFPISALAIASIQYHHQVQALPAKILMLLLLTISVFVVVSLVAATVLNSGLLLPDDDPLFNPSTQRNSTLDGSHRQEPLT* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4049149 4052856 - Chy4G071620.1 Chy04g00444 224343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00444 331 PANTHER - 95 323 IPR030183 GO:0006873|GO:0008308|GO:0016021
Chy04g00444 331 PANTHER - 50 90 IPR030183 GO:0006873|GO:0008308|GO:0016021
Chy04g00444 331 Pfam Voltage-dependent anion channel 96 297 IPR004695 GO:0016021|GO:0055085
Chy04g00444 331 Gene3D - 90 304 IPR038665 -
Chy04g00444 331 PANTHER S-TYPE ANION CHANNEL SLAH4-LIKE 95 323 - -
Chy04g00444 331 PANTHER S-TYPE ANION CHANNEL SLAH4-LIKE 50 90 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00444 - - - csv:101204639 412.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00437 Chy-Chr1:3145654 Chy04g00444 Chy-Chr4:4049149 4.37E-86 dispersed
Chy04g00444 Chy-Chr4:4049149 Chy09g01400 Chy-Chr9:15714676 1.12E-60 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1036 . . . . . . . . . Cmo15g00693 Cma01g01940 . Car01g01516 . . . . . . . . . . . . . . . . . . . . . . . Csa03g04252 Chy04g00444 . . . . . . . . . . Cmo01g02002 . . . . . . Cpe02g00097 . . . . . . . Cla05g01901 Cam05g2037 Cec05g2045 Cco05g2101 Clacu05g2029 Cmu05g1909 Cre05g2031 . . . Cme04g00497
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014475 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 0 1 0 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00444 Chy_Chr04 FPKM 1.134006 1.742503 0.909861 1.131358 1.29836 1.040591 1.349423 0.693934 0.348798 1.182581