Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00453 ATGACGGAGTTGTTCTATTTAGATCGGAAGCAAGAAGATGATCCAGAAAATCAGAGAGCAAGATCAGAACAACAGTTGTTTTTGTATAATAGTAGATCAAACAATCCACAACAGATCTGCTCCAAAGAATTCCAGATATGGCCGCAGTGCTATTCTCACAGCCATCATCCTCCACACCAAAATGTCGAGAATTACATTTCCTTTGGTGTGGGGACTAGTAGAAGATCCAGCTTGATGATCAACGCTTTTGATCGTGACTTTGTTTCGAGATCAGGGTTTACGATGACGAGACATAGCGGCGGAGGAACTGGCGGTGGGATGAATTGTCAAGATTGTGGGAATCAAGCTAAGAAGGATTGTTCCCATTTGAGATGTAGGACTTGTTGCAAGAGTCGAGGGTTTCATTGTCAAACTCATGTCAAAAGCACTTGGGTTCCAGCTGCTAAACGTCGTGAACGACAACAGGAACGTCATCAACAATCGTCAGATCAGACTGTTCCCAAAATTCATAGAGAAATTCCACCGTCTCTCACTGCTACTACCACTTCAGGTGGTTTTTGTTTAACTTCTTCTAATGGTCGAGATTGGTTTGAAAAATTAGGGTTAGAACATGGAAATTTTCAAGGTGAATTCAATTCGTCAGCTGTTTTTCGATGCGTCAAAGTTAGCGCGATTGACAATGTAGAAGAACAATTAGCATATCAAACAGCAGTGAACATTGGTGGACATATGTTCAAAGGAATTCTTTACGACCAAGGTCCAGAATACAGCCAAAATTTGAGCACAGGCGGGGACGGAGAAGATGGTGGGCAAGGGCTAGATTTGGTGATCGGAGCATCAAACGGCAGTGGGAGAGTTAATAACCAATCCACCCCATTTGTGGAATCTTCATTGTATCCCATCCCAATCAACTCATTCAACAACGGTACGCAATTTTTCCCTTCTTCTAGAACATGA 957 42.53 MTELFYLDRKQEDDPENQRARSEQQLFLYNSRSNNPQQICSKEFQIWPQCYSHSHHPPHQNVENYISFGVGTSRRSSLMINAFDRDFVSRSGFTMTRHSGGGTGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQERHQQSSDQTVPKIHREIPPSLTATTTSGGFCLTSSNGRDWFEKLGLEHGNFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPEYSQNLSTGGDGEDGGQGLDLVIGASNGSGRVNNQSTPFVESSLYPIPINSFNNGTQFFPSSRT* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4099929 4101051 + Chy4G071710.1 Chy04g00453 224352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00453 318 MobiDBLite consensus disorder prediction 147 166 - -
Chy04g00453 318 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 315 IPR007818 GO:0003700|GO:0006355
Chy04g00453 318 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 207 254 IPR006511 -
Chy04g00453 318 MobiDBLite consensus disorder prediction 1 20 - -
Chy04g00453 318 Pfam Domain of unknown function (DUF702) 106 255 - -
Chy04g00453 318 MobiDBLite consensus disorder prediction 1 21 - -
Chy04g00453 318 MobiDBLite consensus disorder prediction 147 165 - -
Chy04g00453 318 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 315 - -
Chy04g00453 318 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 108 150 IPR006510 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g01412 Chy04g00453 CCT
Chy03g01412 Chy04g00453 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00453 Chy-Chr4:4099929 Chy10g01367 Chy-Chr10:17909169 9.45E-35 dispersed
Chy01g00302 Chy-Chr1:2133474 Chy04g00453 Chy-Chr4:4099929 6.89E-105 transposed
Chy02g00602 Chy-Chr2:3653304 Chy04g00453 Chy-Chr4:4099929 6.79E-59 wgd
Chy03g01412 Chy-Chr3:16854987 Chy04g00453 Chy-Chr4:4099929 8.04E-70 wgd
Chy04g00453 Chy-Chr4:4099929 Chy07g01266 Chy-Chr7:17371774 2.35E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17815 PF05142 DUF702 3.40E-58 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00453 - - csv:101218246 570.081