Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00482 ATGGAAGTTGCACAAATTCTGTGCATGAACAAAGGAGGTGGAGAAACGAGTTACGCTCGAAACTCATCTCTTCAAAGCAAAATCATATCCGATTCAAAGCGAATCACTGAAGAAGCAGTTGAATCCCTGATAACCACTTTTTCTAATAACAACTACACAACCAGCGTTATTTCTATTGCTGATTTGGGCTGCTCATCTGGGCCCAACACATTACTTCTAGTCTCCGATACGCTCAATCTTATCTACTCTAAATGCAAACGCCTCAGCTACCCACTCCCCGAAGTTCAGGTTTTCCTCAACGATCTCTTCAGCAATGACTTCAACTACATATTTGGGTCGCTCCCCGAGTTCCATCGACGTCTTGTGGTTGAGAACGGTGGGGAAGTCGGGCCTTGTTTTATATCCGGGGTGCCGGGGACTTTTTATGGAAGGTTGTTTCCAAAAAAGAGCTTGAATTTTGTGCATTCTTCATCTAGTTTGCATTGGCTATCGACGGTTCCAGAAGGATTATTGGAAGGGGAAGAGAGAAGGAGGATGAATAAAGGGAAGCTTTATATATCTTCAACGAGTCCGAGGAGTGTGTTGGAGGCTTATGGTAGACAGTTTAAAAGTGACTTTTGGAAGTTTATAAAATCGAGATCTGAAGAAATGGTTAGTGGTGGGAGAATGGTTTTATCTCTTATGGGGAGGAAATCTATGGATCCTACGACTCCTGATAGTTGTCATCATTGGGAGCTCTTGGCCCAGGCTTTAACCACCTTGGCTTCTCAGGGATTAGTTGAAGAGGACAAAATAGACACATTTAACGCACCATACTATGCGCCATGCATGGAAGAAGTGAAGGAAGAGATAGAGAAGGAAGGTTCATTCATGATAGAACGGTTCGAAGCTTTCGAGGTTGAATGGGATGGGTTTGCCAGTGAGGATGAGAATGGCCTCAAAATTCTAACCAGAGGCCAACGAGTGGCTAAGACAATAAGAGCAGTGGTTGAAACCATGTTGGAGTCTCATTTTGGTGGCCATATTATGGATGCTTTGTTTCAACATTATGGGACCATTGTTCAACACTATTTGTCTAACAATAGAACCAAGTATACCAATTTGGTTGTTTCTTTTGTAAAGAAATAA 1128 42.55 MEVAQILCMNKGGGETSYARNSSLQSKIISDSKRITEEAVESLITTFSNNNYTTSVISIADLGCSSGPNTLLLVSDTLNLIYSKCKRLSYPLPEVQVFLNDLFSNDFNYIFGSLPEFHRRLVVENGGEVGPCFISGVPGTFYGRLFPKKSLNFVHSSSSLHWLSTVPEGLLEGEERRRMNKGKLYISSTSPRSVLEAYGRQFKSDFWKFIKSRSEEMVSGGRMVLSLMGRKSMDPTTPDSCHHWELLAQALTTLASQGLVEEDKIDTFNAPYYAPCMEEVKEEIEKEGSFMIERFEAFEVEWDGFASEDENGLKILTRGQRVAKTIRAVVETMLESHFGGHIMDALFQHYGTIVQHYLSNNRTKYTNLVVSFVKK* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4605813 4607465 + Chy4G072000.1 Chy04g00482 224381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00482 375 Gene3D Vaccinia Virus protein VP39 21 362 IPR029063 -
Chy04g00482 375 Pfam SAM dependent carboxyl methyltransferase 48 373 IPR005299 GO:0008168
Chy04g00482 375 Gene3D - 6 361 IPR042086 -
Chy04g00482 375 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 3 372 IPR005299 GO:0008168
Chy04g00482 375 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 3 372 - -
Chy04g00482 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 375 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00482 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] - csv:101220850 719.539
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00625 Chy-Chr2:3824103 Chy04g00482 Chy-Chr4:4605813 2.20E-94 dispersed
Chy02g00626 Chy-Chr2:3828811 Chy04g00482 Chy-Chr4:4605813 4.67E-26 dispersed
Chy04g00482 Chy-Chr4:4605813 Chy10g00278 Chy-Chr10:6921096 2.48E-57 dispersed
Chy06g02242 Chy-Chr6:26488450 Chy04g00482 Chy-Chr4:4605813 1.30E-93 transposed
Chy02g00623 Chy-Chr2:3798823 Chy04g00482 Chy-Chr4:4605813 1.13E-87 wgd
Chy04g00482 Chy-Chr4:4605813 Chy07g01249 Chy-Chr7:17221459 2.93E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g981 . Blo12g00901 . Bda03g00269 . . Bma04g00217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00482 . . . . . . . . . . . . . . . . . . . . . . . . . Cla05g01919 Cam05g2056 Cec05g2068 Cco05g2120 Clacu05g2050 Cmu05g1927 Cre05g2050 . . . Cme04g00536
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00482 Chy_Chr04 FPKM 1.652083 0.548953 0.687906 0.0 0.0 0.0 0.245202 0.608907 1.010074 0.52978