Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00487 ATGGACTATCAAGCCTCCTCAACTGTCTACAACAAGTTTTCTAATGCTCGTAGTTTCAACGATAAATCGGCGTACGATGGCGTCTTTGCTGCTCCGTCGAAGCACGGAGCTCCGGTCTTCTCTGCTCGAGTTGAGGACTACAGAGAGATTTTTGGCGGTTCCCGAGTTTCTTCGATTCCGATTCTCGATGTTCCGGCACTGAGCGATAAGAAGTTTCCGGTTGATGTTCGTTCTTCGAAAGTTGAATATTCGAAGATTTTTGGTGGCTTTGATGAGTTAAATTTCGCCATACCTTATGAGGAGCTTCTGGTGGAGGCAAACAAAACAAATTCGTTTTCTCAGAAAACTCGGATCTCTGCTGGAAGAGGATCCACGGCAGCTGAAAATTCTTCTCAGTATGAAAAGGAAAGTAACTTTTCCACCCGTGAAGCTTCATCTCAACCACTTGATAGAATGGAGAAATTCAGCGTGTCATATCAAAAGATCAACCAAGGAAACAAAAGTTATTCTACGGAGACAGCTCATGTAGCTCTTCCCCATGCCATTCCAGGTTTTTCATGTGTAATTGATCAACAATCTCCTGTACAGATGTCTGGAACTGGTATGCCATCGTCCGAAAAATTGAATAATATTCGCCCAGAAATCATTGGGAATACTGAAGCGGCAGATAAGTCTTATCTTCCAATTTCTGGTGATAGTGAACAGGTATTTAAGTCTAGTAATCCAACCAATTCCCAGAGCAGAACTGGGTGGTTTAGATCAGATTCAGCTGATAAGTTATTCAATGGGTATGAGGTGGATCAAGGGGTACAGAACCCTGACACTCCACCAAAATGTAATTTTCTGCCTAAGTTTGGTATAAGTGCGGGATTTTCAGGGAGAACAACTGGTTTAAAGTCTGAAGCTTTGGAACATTCTAAAGATCCTTGCGATGGTTCTTCACCGCCATATTTTGGTGAGGATGTGGAGGTGAATCCAGTTGCTGCTGCCTCTGTTGCAGCTTTGAGAAAAGCAATTGACGCTGCTCAGGAAAGTATAAAAATTGCTAAGGAGTCGATGGAAAGAAGGAAAACTGCCGGACTTCAAAAACATAAAAAAACAAGTTCTTCTAGGAGGCTAACCTCTGAAGAGAAAAGGGAAGTAAAAACTTCAAACAATTCAGGCACATGCCAAGAGAAGGTGGCTGGGGAAACTTGTCGAAAAGTGGATACTTTGGAGCAAGCGGTTGCTGAAATCAGGAGACAGAATTCAACTACAGAATGTCCTATCACTCAAAGTGCAGTGAGGGAAAATTTAAATGCCTCAGGAACAAATAATATGGAATTTAAGATGACAGAAGTTGAATGTAGGGAGGAAGAGGGTGAAGAATTAGATGCAAAAGAACAATTTTATGAACCTAGGTCTTTTGGTGAAGACGAGGCAGAAGAACTGGAACCTGTCAAGGAAGACAATGCAGATGGATATGAATGGCAAGGAAACAATGGATTGAAGAAAACATTTGAGAATCGTGGAGAGTCTGGTGATAGCTTGGTTGTGGTCAAAGAGGCTGGACCGGAGGAAGGTGGCATAAACTTAAGTGTAGTCAAAGGCATCCTTATGAGCAAATTAAAGTCAGTTCTAGGTGTCGTTGAGCATGTAGAAGATAAAATGAAATTTGGCCAAAACCAAAGCCAGCTAGAAACGAACATGAAAGTTGAGTCATCAATGGAGCATAAGAAATGTGTGGAATTGCTGGAAGAACTTAAAGTAACAAAAGATCGCGAGGAGTTCGTAAACAGGGAGATAGAGGAAGAGAGTGATATGGAGACCCATTTTAAGGCCCATCAATGGGGGGTGGAGGAAGTAAGACATATCTGCCAACAAGAAGAAAAGGAGATGGAAACAAATACTGTGCAAATTGAAAATAATGTTGAAAAGATATTAGACAAAACTAATGAAGATGAAAGAAATATAAATTTGATTGATGACTTCCACGATGATGGCAAAGATTCTCATGTCATGGAAGAAAGTGGCGAATTGAAACTAAGCAGCCTTCAAGAAAACAAACAGGATGATGAGATATTTGAAGGGATTTCCTTTCATTTGTTCAATCATGAGATTGAACATGTTCTTAGACAAATAAACATTGGTGAATGTGGAGTACCAGAGAGCATTGTAAAAGCAACGCTAGACAATCGGAATACCAAGAGTAAAATTGAATTACAAGATGGTTCATGTAAGCAGGATGAGGTTAGCAAACTCTCAGAAGATCAGGAAGCTAGTGATTTTATAGAAAGTATGGAAGGAGTGGAAGTGATTCTTGACCAACCTGCATACCGAGACATTGATAATTCAAAAGATGTAGAAAAAGTTTCCTTTGAAGTTGAAAGTAATGAATCTGAGACAATTACAGAGGGTGACATGGAGGATAGATTGCCTTTTGAATTGTTTTCCCTGGCCGAGGATGCACTTAAATGTAGAGAATTTAAAATTAGGATGGATCATTCACACATAAGCCCTATTATAATCCAAAATGGGGTAGATTTTGGTGTGATCGATATTAAATTGGGGCAAAAATATAAAGAAGCTTTGGCTCCAGAATTTAGAGAAATTGAGAGAAATATAGAGGAAATTGAATTCTCAACAAACAAAGAAAATGATGACAACAATTCAAATGAAGAAGTGACGTTCCGAACTGCAAATAATATCAATATTGAAGCAAGCAATGAGCCTAGTACATCTGAAGATGACAAGAAAATCAGTGAAGAAGCAATGGAGGAAATGGTCACGAGCATAATTGCTGAAGCAACTCAGGAGAACTATCAAGCAACCATCAAAGTAGAAGAAAGTGAAACTGGTTATGTATTGAAAAAGGAAATGCAGTTAGACTCGAATGAGAACAATAATAGAGCAGGTAGCCAATCTGGCACGATTGAAATAGATTCAGGAATAATTCATATGATCAAAACAAGTCAAAGTTCAAGAGAAAGTGAGGAGAGTTATCACGTGACAGAGGATGAAATGGAAGCTAGTGGTTCCTCTGACGAAGAGTTGGAATATGCAGCTCACTTGGAAAATTTAGAAGTTAATTCGTCTGGAAGCTCTGAAAGTAAAGAAAATTTAGCTGACATGGAACAGGAAATTAGTTCTAGCCAAAAGGTTACAAATAATGACGATCATCAAACGACCCCAACCCTGGGTGAAACTCAAACTAATGCTGACATGCAGACAAGAGAAGCAGGGGTTGAATCCAAATTCAACAGTGAGACAGCAGCTCGTGGTTTGTCTCAAGCTAAAGAGGTAGTAGAGAAATTAGCTGAGAATTTGGCAAATCAAAGTATCTTAGAAACTGGGGAGAATGATCAAACGACCCATTTAATGGAGGAGGAGAATGTATTCCATGAAACATTTGAGAAAGAAGCTGAAGTGATTAAGGGACGGCAGAGAAAAATTGATGAAGCCAAAGAAAAGGAGAAAGAGAGGGAGAGATTAGCTGTAGAAAGAGCAATTCGTGAGGCCCGTGAAAGGGCATTTGTAGAAGCCCGAGAGAGGGCTGCTGCCGGGAGAGCTTCTGCTGACACTCGTAGAAGAGTAATGGCTGAGGCACGTGATCGCTCGGGGAAGGTTTCCATAGAGACCAATCATAAGCCTTCTGCTGATAAGGTTTCAAAGGAAGCCAAATTAAAAGCTCAACGTGCTGCTGTTGAAATGGCTACTGCTGAGGCTAGGGAGCGTGCTTTAGAAAAAGCTATGTCTGAGAAGGCTATTTCTGAGGCACGAAATCTTGCTGACAAGATTGTTGCCGAAAAATTACATGGTGCTGCTGGAGATAGCAGAGTAAAGAAGAGTTTTTCATTTAGTGACTCTCAGCCAAAAAGCCCAGGTTCTTCCAACAATTTCAGGCATGCGAATTCATTTAACCTTGGAGGCGCTGACTCTTCAGAGAGAGAGGTGGGATCTTCTGGGGAATCAGCTCAAAGATGTAAAGCCAGGTTGGAGAGACATCAACGAACCGTTGAGCGTGTGGCAAAAGCTCTTGCAGAGAAGAATATTCGTGACATTCTTGCACAAAAAGAACAGGAAGAGAGAAATAGACTTGCGGAATCTCTAGATGCTGAAGTTAAACGGTGGTCAAGTGGGAAGGAGGGAAATCTGCGTGCATTGCTCTCAACTCTTCAATATATTCTTGGACCCGACAGTGGGTGGCAGGCAGTCCCTCTAACAGATATCATCACGACTGCTGCTGTCAAGAAAGCTTACCGTAGAGCAACTCTTTCCGTTCATCCTGACAAATTGCAACAACGTGGTGCAACCATTCAACAAAAGTACATATGCGAAAAGGTTTTTGATCTTTTGAAGGCTGCATGGAACAGGTTCAACGTGGAGGAACGATAG 4374 41.02 MDYQASSTVYNKFSNARSFNDKSAYDGVFAAPSKHGAPVFSARVEDYREIFGGSRVSSIPILDVPALSDKKFPVDVRSSKVEYSKIFGGFDELNFAIPYEELLVEANKTNSFSQKTRISAGRGSTAAENSSQYEKESNFSTREASSQPLDRMEKFSVSYQKINQGNKSYSTETAHVALPHAIPGFSCVIDQQSPVQMSGTGMPSSEKLNNIRPEIIGNTEAADKSYLPISGDSEQVFKSSNPTNSQSRTGWFRSDSADKLFNGYEVDQGVQNPDTPPKCNFLPKFGISAGFSGRTTGLKSEALEHSKDPCDGSSPPYFGEDVEVNPVAAASVAALRKAIDAAQESIKIAKESMERRKTAGLQKHKKTSSSRRLTSEEKREVKTSNNSGTCQEKVAGETCRKVDTLEQAVAEIRRQNSTTECPITQSAVRENLNASGTNNMEFKMTEVECREEEGEELDAKEQFYEPRSFGEDEAEELEPVKEDNADGYEWQGNNGLKKTFENRGESGDSLVVVKEAGPEEGGINLSVVKGILMSKLKSVLGVVEHVEDKMKFGQNQSQLETNMKVESSMEHKKCVELLEELKVTKDREEFVNREIEEESDMETHFKAHQWGVEEVRHICQQEEKEMETNTVQIENNVEKILDKTNEDERNINLIDDFHDDGKDSHVMEESGELKLSSLQENKQDDEIFEGISFHLFNHEIEHVLRQINIGECGVPESIVKATLDNRNTKSKIELQDGSCKQDEVSKLSEDQEASDFIESMEGVEVILDQPAYRDIDNSKDVEKVSFEVESNESETITEGDMEDRLPFELFSLAEDALKCREFKIRMDHSHISPIIIQNGVDFGVIDIKLGQKYKEALAPEFREIERNIEEIEFSTNKENDDNNSNEEVTFRTANNINIEASNEPSTSEDDKKISEEAMEEMVTSIIAEATQENYQATIKVEESETGYVLKKEMQLDSNENNNRAGSQSGTIEIDSGIIHMIKTSQSSRESEESYHVTEDEMEASGSSDEELEYAAHLENLEVNSSGSSESKENLADMEQEISSSQKVTNNDDHQTTPTLGETQTNADMQTREAGVESKFNSETAARGLSQAKEVVEKLAENLANQSILETGENDQTTHLMEEENVFHETFEKEAEVIKGRQRKIDEAKEKEKERERLAVERAIREARERAFVEARERAAAGRASADTRRRVMAEARDRSGKVSIETNHKPSADKVSKEAKLKAQRAAVEMATAEARERALEKAMSEKAISEARNLADKIVAEKLHGAAGDSRVKKSFSFSDSQPKSPGSSNNFRHANSFNLGGADSSEREVGSSGESAQRCKARLERHQRTVERVAKALAEKNIRDILAQKEQEERNRLAESLDAEVKRWSSGKEGNLRALLSTLQYILGPDSGWQAVPLTDIITTAAVKKAYRRATLSVHPDKLQQRGATIQQKYICEKVFDLLKAAWNRFNVEER* 1458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4656723 4662232 - Chy4G072050.1 Chy04g00487 224386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00487 1457 MobiDBLite consensus disorder prediction 1275 1304 - -
Chy04g00487 1457 Coils Coil 1318 1369 - -
Chy04g00487 1457 SUPERFAMILY Chaperone J-domain 1316 1453 IPR036869 -
Chy04g00487 1457 Coils Coil 1216 1243 - -
Chy04g00487 1457 Coils Coil 1140 1169 - -
Chy04g00487 1457 MobiDBLite consensus disorder prediction 1266 1322 - -
Chy04g00487 1457 Coils Coil 578 598 - -
Chy04g00487 1457 MobiDBLite consensus disorder prediction 351 389 - -
Chy04g00487 1457 MobiDBLite consensus disorder prediction 1178 1220 - -
Chy04g00487 1457 Gene3D DnaJ domain 1331 1457 IPR036869 -
Chy04g00487 1457 MobiDBLite consensus disorder prediction 983 1078 - -
Chy04g00487 1457 MobiDBLite consensus disorder prediction 985 1002 - -
Chy04g00487 1457 MobiDBLite consensus disorder prediction 369 383 - -
Chy04g00487 1457 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 1457 - -
Chy04g00487 1457 MobiDBLite consensus disorder prediction 114 150 - -
Chy04g00487 1457 Coils Coil 1085 1108 - -
Chy04g00487 1457 Coils Coil 332 352 - -
Chy04g00487 1457 MobiDBLite consensus disorder prediction 1020 1078 - -
Chy04g00487 1457 PANTHER AUXILIN-LIKE PROTEIN 1 1 1457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00487 - - - csv:101221326 2659.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00758 Chy-Chr3:10156227 Chy04g00487 Chy-Chr4:4656723 2.48E-48 dispersed
Chy04g00487 Chy-Chr4:4656723 Chy04g00532 Chy-Chr4:5296910 6.68E-33 dispersed
Chy02g00633 Chy-Chr2:3871269 Chy04g00487 Chy-Chr4:4656723 2.00E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g969 Blo01g01570 . . . . . . Bma01g02328 . . Cma01g01918 . Car01g01499 . . . . . . . . . . . . . . . . . . Cone4ag1922 Cone7ag1834 . . Lsi04g01688 Csa03g04228 Chy04g00487 . . . . . . . . . . Cmo01g01981 . . . . . . Cpe02g00118 . . . . . . . Cla05g01924 Cam05g2061 Cec05g2074 Cco05g2125 Clacu05g2055 Cmu05g1932 Cre05g2055 . . . Cme04g00546
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008012 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 8 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00487 Chy_Chr04 FPKM 2.878261 3.578191 4.044533 4.710023 8.589405 9.832215 9.247168 3.25805 3.112363 3.248579