Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00489 ATGCCTCTGAGAGGCATAATTGGTGAGAAGACTGAAATACGTGAAAGCAGTGGGAATTCGTCGAGGAAAGTTAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTTCCAGAACAGCCTTCTTCTTCATCTTCTCCGGTTCTGGTTGAACAGAGCCGTTGGGCGAATTTACCTCCGGAGCTTCTTTTGGACGTAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCTCGTCGGGATGTTGTTGCTTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAGTCGTTAGGACTCCTGAACAGTGTGGGTGGATCACGTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGAGATACTCCGATCCAGTGCTTCATTAAGAGAGAAAGGGCAACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCTCTGTCGGGTAATCTTAGTAAACTGTTGCTAACTGCAAAAAGAATTCGACGAGCAATGAGTACAGAGTTCAATATATCATTAGTTCCAGACGACTTCTCTCGAGCAAGCAACAATTACTTGGGAAAGTTAAGATCAAATTTTCTGGGGACCAAGTTTTCAATTTATGACAGTCAACCTCCTCATGACCCAAAATTGCGAACCAGTAGATCGAAAAGAAGAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAACAAACTATAAAGTCGCTGCCGTAGCTTACGAGCTCAACGTCCTCCGTACGAGAGGTCCAAGAAGAATGCGATGCACCATGCATTCAATACCTATTGCGTCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACGGAGTTTAAAGACTGTATCGATGAGTATCATTCCTCAACACCACTTTTCAAAGGAAAGAAGGCAACAACCGAGTCCCCAACCGAGTCCCCCGACTCTCAAGAATCGGTAGCTCCATTGGTATTGAAGAACAAAGCTCCAAGATGGCACGAGCAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTCGCATCAGTGAAGAACTTCCAGCTTGTTGCTGCTGCGGAGACGAGTCAAAATGTATCGGCAGCCGAACAAGAGAGAGTTATTTTGCAGTTTGGTAAGATTGGAAAGGATATTTTTACGATGGATTATCGGTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACGAAGCCAGCCTGTGAATGA 1236 46.2 MPLRGIIGEKTEIRESSGNSSRKVREGVQMRHLGKSHIVPEQPSSSSSPVLVEQSRWANLPPELLLDVIQRVEASETSWPSRRDVVACASVCRSWRMITKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTEFNISLVPDDFSRASNNYLGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSKTPTNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIASVEEGGTAPTPTEFKDCIDEYHSSTPLFKGKKATTESPTESPDSQESVAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4705059 4707447 + Chy4G072070.1 Chy04g00489 224388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00489 411 PRINTS Tubby superfamily signature 321 338 IPR000007 -
Chy04g00489 411 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Chy04g00489 411 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Chy04g00489 411 PRINTS Tubby superfamily signature 339 355 IPR000007 -
Chy04g00489 411 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Chy04g00489 411 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Chy04g00489 411 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Chy04g00489 411 MobiDBLite consensus disorder prediction 296 316 - -
Chy04g00489 411 Gene3D Tubby Protein; Chain A 115 411 IPR025659 -
Chy04g00489 411 ProSitePatterns Tub family signature 1. 339 352 IPR018066 -
Chy04g00489 411 Gene3D - 52 105 - -
Chy04g00489 411 MobiDBLite consensus disorder prediction 14 32 - -
Chy04g00489 411 ProSitePatterns Tub family signature 2. 396 411 IPR018066 -
Chy04g00489 411 SUPERFAMILY F-box domain 45 100 IPR036047 GO:0005515
Chy04g00489 411 PANTHER TUBBY-RELATED 1 411 - -
Chy04g00489 411 MobiDBLite consensus disorder prediction 14 47 - -
Chy04g00489 411 Pfam Tub family 118 406 IPR000007 -
Chy04g00489 411 Pfam F-box domain 57 104 IPR001810 GO:0005515
Chy04g00489 411 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 411 - -
Chy04g00489 411 SUPERFAMILY Tubby C-terminal domain-like 106 411 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00489 K19600 TUB, TULP; tubby and related proteins - csv:101222500 810.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00489 Chy-Chr4:4705059 Chy11g01469 Chy-Chr11:21443334 6.34E-152 dispersed
Chy06g01095 Chy-Chr6:9150966 Chy04g00489 Chy-Chr4:4705059 1.37E-151 transposed
Chy03g00407 Chy-Chr3:6030423 Chy04g00489 Chy-Chr4:4705059 1.64E-57 transposed
Chy02g00642 Chy-Chr2:3917442 Chy04g00489 Chy-Chr4:4705059 8.23E-180 wgd
Chy04g00489 Chy-Chr4:4705059 Chy07g01239 Chy-Chr7:17147729 3.92E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g960 Blo01g01567 Blo12g00905 Bda01g00525 Bda03g00263 Bpe02g00385 Bpe04g00217 Bma04g00212 . . . Cma01g01916 Cma09g00148 Car01g01497 . . Cpe06g00104 . . . . . . . . . . . . . . . Cone4ag1918 Cone7ag1830 . . Lsi04g01686 Csa03g04225 Chy04g00489 . . . . . . . . . . Cmo01g01979 Cmo09g00146 . . . Car09g00133 . Cpe02g00120 . . . . . . . Cla05g01926 Cam05g2064 Cec05g2076 Cco05g2127 Clacu05g2058 Cmu05g1935 Cre05g2058 . . . Cme04g00548
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g01095 . 1 429 TUB Transcription Factor Family AT1G76900 69.9 1.9e-169 592.4
Chy03g00507 . 1 433 TUB Transcription Factor Family AT1G76900 69.4 4.2e-169 591.3
Chy11g01469 CCT,ECH 13 387 TUB Transcription Factor Family AT1G76900 50.9 7.8e-115 411.0
Chy06g00654 CCT,ECH 13 388 TUB Transcription Factor Family AT1G76900 51.3 1.6e-112 403.3
Chy02g00642 CCT,ECH 38 403 TUB Transcription Factor Family AT1G76900 51.9 1.3e-106 383.6
Chy03g00407 . 1 190 TUB Transcription Factor Family AT1G76900 77.3 5.6e-81 298.5
Chy06g01095 . 174 429 TUB Transcription Factor Family AT1G25280 74.3 5.8e-102 367.5
Chy03g00507 . 175 433 TUB Transcription Factor Family AT1G25280 70.4 2.2e-93 339.0
Chy07g01239 CCT,ECH 244 482 TUB Transcription Factor Family AT1G25280 56.8 4.1e-71 265.0
Chy06g00654 CCT,ECH 154 388 TUB Transcription Factor Family AT1G25280 53.7 9.1e-71 263.8
Chy04g00489 . 180 412 TUB Transcription Factor Family AT1G25280 54.7 2.5e-68 255.8
Chy11g01469 CCT,ECH 154 387 TUB Transcription Factor Family AT1G25280 53.0 7.9e-67 250.8
Chy02g00642 CCT,ECH 164 403 TUB Transcription Factor Family AT1G25280 51.7 8.8e-66 247.3
Chy11g01469 CCT,ECH 98 387 TUB Transcription Factor Family AT5G18680 62.9 1.9e-98 355.9
Chy06g00654 CCT,ECH 98 388 TUB Transcription Factor Family AT5G18680 64.0 4.3e-98 354.8
Chy03g00507 . 112 433 TUB Transcription Factor Family AT5G18680 52.9 1.8e-83 306.2
Chy06g01095 . 113 429 TUB Transcription Factor Family AT5G18680 53.0 8.8e-83 303.9
Chy07g01239 CCT,ECH 185 482 TUB Transcription Factor Family AT5G18680 53.8 3.5e-79 292.0
Chy07g01239 CCT,ECH 39 481 TUB Transcription Factor Family AT2G18280 58.1 1.0e-139 493.4
Chy02g00642 CCT,ECH 7 402 TUB Transcription Factor Family AT2G18280 61.7 1.7e-134 476.1
Chy04g00489 . 1 411 TUB Transcription Factor Family AT2G18280 60.0 1.5e-125 446.4
Chy06g01095 . 1 428 TUB Transcription Factor Family AT2G18280 53.1 2.7e-119 425.6
Chy06g00654 CCT,ECH 1 387 TUB Transcription Factor Family AT2G18280 54.1 1.0e-115 413.7
Chy03g00507 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.1e-112 403.7
Chy11g01469 CCT,ECH 1 386 TUB Transcription Factor Family AT2G18280 53.2 2.4e-112 402.5
Chy07g00990 . 50 381 TUB Transcription Factor Family AT2G18280 50.4 1.5e-93 340.1
Chy03g00407 . 1 190 TUB Transcription Factor Family AT2G18280 53.1 6.4e-49 191.8
Chy06g00654 CCT,ECH 1 388 TUB Transcription Factor Family AT2G47900 68.3 7.1e-160 560.5
Chy11g01469 CCT,ECH 1 387 TUB Transcription Factor Family AT2G47900 68.3 1.3e-158 556.2
Chy06g01095 . 1 429 TUB Transcription Factor Family AT2G47900 56.7 6.9e-131 464.2
Chy03g00507 . 1 433 TUB Transcription Factor Family AT2G47900 56.5 9.1e-131 463.8
Chy07g01239 CCT,ECH 39 482 TUB Transcription Factor Family AT2G47900 52.3 2.3e-118 422.5
Chy04g00489 . 10 412 TUB Transcription Factor Family AT2G47900 55.5 1.5e-117 419.9
Chy02g00642 CCT,ECH 10 403 TUB Transcription Factor Family AT2G47900 52.5 1.4e-110 396.7
Chy07g00990 . 51 381 TUB Transcription Factor Family AT2G47900 51.5 1.6e-98 356.7
Chy03g00407 . 1 190 TUB Transcription Factor Family AT2G47900 56.0 2.1e-58 223.4
Chy01g01931 . 84 299 TUB Transcription Factor Family AT1G16070 62.7 1.5e-74 276.6
Chy06g01095 . 66 429 TUB Transcription Factor Family AT1G43640 68.1 4.7e-147 517.7
Chy03g00507 . 65 433 TUB Transcription Factor Family AT1G43640 65.9 1.0e-141 500.0
Chy11g01469 CCT,ECH 47 387 TUB Transcription Factor Family AT1G43640 52.1 6.9e-106 380.9
Chy06g00654 CCT,ECH 49 388 TUB Transcription Factor Family AT1G43640 53.6 1.2e-105 380.2
Chy04g00489 . 69 412 TUB Transcription Factor Family AT1G43640 50.7 1.6e-99 359.8
Chy02g00642 CCT,ECH 55 403 TUB Transcription Factor Family AT1G43640 50.4 1.2e-94 343.6
Chy03g00407 . 67 190 TUB Transcription Factor Family AT1G43640 79.8 5.5e-55 211.8
Chy04g00489 . 34 412 TUB Transcription Factor Family AT1G47270 64.6 2.2e-134 475.7
Chy02g00642 CCT,ECH 21 403 TUB Transcription Factor Family AT1G47270 57.0 1.1e-120 430.3
Chy07g01239 CCT,ECH 72 482 TUB Transcription Factor Family AT1G47270 54.4 1.3e-118 423.3
Chy06g01095 . 1 429 TUB Transcription Factor Family AT1G47270 52.2 1.1e-114 410.2
Chy03g00507 . 48 433 TUB Transcription Factor Family AT1G47270 53.5 6.9e-112 401.0
Chy11g01469 CCT,ECH 1 387 TUB Transcription Factor Family AT1G47270 50.9 1.0e-107 387.1
Chy06g00654 CCT,ECH 1 388 TUB Transcription Factor Family AT1G47270 50.4 4.0e-104 375.2
Chy03g00407 . 30 190 TUB Transcription Factor Family AT1G47270 54.2 1.7e-46 183.7
Chy07g00990 . 1 381 TUB Transcription Factor Family AT1G53320 71.4 3.2e-154 541.6
Chy11g01469 CCT,ECH 22 387 TUB Transcription Factor Family AT1G53320 50.8 2.0e-103 372.9
Chy06g00654 CCT,ECH 22 388 TUB Transcription Factor Family AT1G53320 50.3 1.9e-98 356.3
Chy06g00654 CCT,ECH 98 388 TUB Transcription Factor Family AT3G06380 64.4 1.8e-96 349.4
Chy11g01469 CCT,ECH 98 387 TUB Transcription Factor Family AT3G06380 62.6 3.3e-95 345.1
Chy06g01095 . 117 429 TUB Transcription Factor Family AT3G06380 54.0 4.2e-82 301.6
Chy03g00507 . 116 433 TUB Transcription Factor Family AT3G06380 52.8 1.8e-80 296.2
Chy07g01239 CCT,ECH 185 482 TUB Transcription Factor Family AT3G06380 53.4 8.8e-80 293.9
Chy04g00489 . 120 412 TUB Transcription Factor Family AT3G06380 53.2 1.7e-78 289.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005909 3 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17819 PF01167 Tub 3.20E-105 CL0395 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00489 Chy_Chr04 FPKM 2.546546 3.353788 5.128508 4.916745 9.898364 10.669586 10.001527 9.733292 8.971391 7.426078