Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00489 ATGCCTCTGAGAGGCATAATTGGTGAGAAGACTGAAATACGTGAAAGCAGTGGGAATTCGTCGAGGAAAGTTAGGGAGGGAGTTCAAATGCGTCATCTCGGGAAGTCGCATATTGTTCCAGAACAGCCTTCTTCTTCATCTTCTCCGGTTCTGGTTGAACAGAGCCGTTGGGCGAATTTACCTCCGGAGCTTCTTTTGGACGTAATTCAACGAGTGGAAGCGAGTGAAACCTCTTGGCCTTCTCGTCGGGATGTTGTTGCTTGTGCTTCAGTTTGCAGGTCATGGCGGATGATTACAAAGGAAGTCGTTAGGACTCCTGAACAGTGTGGGTGGATCACGTTCCCAATTTCTCTGAAGCAGCCGGGACCAAGAGATACTCCGATCCAGTGCTTCATTAAGAGAGAAAGGGCAACTTCAACGTTTCGACTCTATCTCGGGCTAAGCCCTGCTCTGTCGGGTAATCTTAGTAAACTGTTGCTAACTGCAAAAAGAATTCGACGAGCAATGAGTACAGAGTTCAATATATCATTAGTTCCAGACGACTTCTCTCGAGCAAGCAACAATTACTTGGGAAAGTTAAGATCAAATTTTCTGGGGACCAAGTTTTCAATTTATGACAGTCAACCTCCTCATGACCCAAAATTGCGAACCAGTAGATCGAAAAGAAGAATCCATTTGAAACAGGTTTCTCCAAGTAAAACTCCAACAAACTATAAAGTCGCTGCCGTAGCTTACGAGCTCAACGTCCTCCGTACGAGAGGTCCAAGAAGAATGCGATGCACCATGCATTCAATACCTATTGCGTCCGTGGAGGAGGGTGGCACTGCCCCAACTCCAACGGAGTTTAAAGACTGTATCGATGAGTATCATTCCTCAACACCACTTTTCAAAGGAAAGAAGGCAACAACCGAGTCCCCAACCGAGTCCCCCGACTCTCAAGAATCGGTAGCTCCATTGGTATTGAAGAACAAAGCTCCAAGATGGCACGAGCAGCTTCAGTGTTGGTGCTTAAACTTCAAAGGGCGTGTCACGGTCGCATCAGTGAAGAACTTCCAGCTTGTTGCTGCTGCGGAGACGAGTCAAAATGTATCGGCAGCCGAACAAGAGAGAGTTATTTTGCAGTTTGGTAAGATTGGAAAGGATATTTTTACGATGGATTATCGGTATCCTCTCTCAGCTTTCCAAGCCTTTGCAATTTGTCTTAGTAGCTTTGATACGAAGCCAGCCTGTGAATGA 1236 46.2 MPLRGIIGEKTEIRESSGNSSRKVREGVQMRHLGKSHIVPEQPSSSSSPVLVEQSRWANLPPELLLDVIQRVEASETSWPSRRDVVACASVCRSWRMITKEVVRTPEQCGWITFPISLKQPGPRDTPIQCFIKRERATSTFRLYLGLSPALSGNLSKLLLTAKRIRRAMSTEFNISLVPDDFSRASNNYLGKLRSNFLGTKFSIYDSQPPHDPKLRTSRSKRRIHLKQVSPSKTPTNYKVAAVAYELNVLRTRGPRRMRCTMHSIPIASVEEGGTAPTPTEFKDCIDEYHSSTPLFKGKKATTESPTESPDSQESVAPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAETSQNVSAAEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4705059 4707447 + Chy4G072070.1 Chy04g00489 224388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00489 411 PRINTS Tubby superfamily signature 321 338 IPR000007 -
Chy04g00489 411 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Chy04g00489 411 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Chy04g00489 411 PRINTS Tubby superfamily signature 339 355 IPR000007 -
Chy04g00489 411 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Chy04g00489 411 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Chy04g00489 411 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Chy04g00489 411 MobiDBLite consensus disorder prediction 296 316 - -
Chy04g00489 411 Gene3D Tubby Protein; Chain A 115 411 IPR025659 -
Chy04g00489 411 ProSitePatterns Tub family signature 1. 339 352 IPR018066 -
Chy04g00489 411 Gene3D - 52 105 - -
Chy04g00489 411 MobiDBLite consensus disorder prediction 14 32 - -
Chy04g00489 411 ProSitePatterns Tub family signature 2. 396 411 IPR018066 -
Chy04g00489 411 SUPERFAMILY F-box domain 45 100 IPR036047 GO:0005515
Chy04g00489 411 PANTHER TUBBY-RELATED 1 411 - -
Chy04g00489 411 MobiDBLite consensus disorder prediction 14 47 - -
Chy04g00489 411 Pfam Tub family 118 406 IPR000007 -
Chy04g00489 411 Pfam F-box domain 57 104 IPR001810 GO:0005515
Chy04g00489 411 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 411 - -
Chy04g00489 411 SUPERFAMILY Tubby C-terminal domain-like 106 411 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00489 Chy-Chr4:4705059 Chy11g01469 Chy-Chr11:21443334 6.34E-152 dispersed
Chy06g01095 Chy-Chr6:9150966 Chy04g00489 Chy-Chr4:4705059 1.37E-151 transposed
Chy03g00407 Chy-Chr3:6030423 Chy04g00489 Chy-Chr4:4705059 1.64E-57 transposed
Chy02g00642 Chy-Chr2:3917442 Chy04g00489 Chy-Chr4:4705059 8.23E-180 wgd
Chy04g00489 Chy-Chr4:4705059 Chy07g01239 Chy-Chr7:17147729 3.92E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17819 PF01167 Tub 3.20E-105 CL0395 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00489 K19600 - csv:101222500 810.831