Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00518 ATGGCAAAGAGATCAGATTTTGCTCAGAAGCTGTTAGATGATCTCAGATTAAGGAAAGAGCGAATGGCTGCTGCATCGCAGACCTCGAACCGTTCCAAAACTACAACGATCGATGCGTATTCTTACTCAAAACAAATCCATAGAGGTTCAAAGAACACTAAAACACATGGAATGAGTGTTCCTAAGACTGGGAACACAATAAACACAAGGTATGGCGGAGGCAATAAATCACCAATGACTAATGATACTTCAAATCAAATTGTTCCTTACACTAGAGACCGGAACTCGGAACAAATAGGAGACTTGTCCATGGCCTTGGCTTTTGCACTGGAAAATGGAGGAAAACTAAGAGGAAATGCTTCATCGGGAAACAATTTGATGCTGGGCTTCCTGCAACAAATTGGTAGGAGGTCCTTCCAAATTGGGAAAATGAACAAAAGAGGCGGCCTGGACAGGAATCACAATGTAACTGGATACTTTCCAACCATCTCACATCTGCATATTAAGGAGATATCAAAGGGGGCACATAAATTGAACCAGATTCTAAGAACTTGCTCAAATGGTTCTGATTTTGGCAGATGTTCCATTGAAATTGGACAGGAACTGTTGAAGGGGGCTATGGATTTGGAGGAATCTTTGAGGATGCTTGTGAACTTGCATGAGGCTTCAGAGCACGTGATCAGCCCACAACAGAAGAATAGGATTGTACTCCTAGAGAATGAAGAAGATGCAGAAGAAAATAAAGATGAAGCACTTGATCAGAAACTTTACCAACCGCGGTTCTCCTTGGAAAAACTGCCCCTAAATTCACGCAGCAGCCAAGAAGTCAAAGGAAATGGTCACAACCAGAAATTAGCAACACTAAGATACAGTGCAGAGGGAGGAAATTTCAACCAGGAAGAACAACCTCTAACTACTGTAAAATTGAGTTTCCATAGAAGATCAGCAACTTGTGGCCATGATGTCAGAACTTCAAACACACGTGAAAAGGTGGGAATCTCAAATGTAATTGCAAAACTAATGGGGCTAGATAATCTTTCAGACAATTCAAATTATGCACATAAGGACTCAGGTTCCAAGCAAAAGGTCACACAAAAGGATCTGCAGCCATCCACCAGGGGTATCACCAAAAAGGCTGAGCCAAGGACTAATATTACAGAAAGTCGGTCCAACTCCGGAAATCCAAAACCAAGCATATCAGATAAGAATTCAACTGTGGTGAACACCATATTTGTTTCGCAAGCAATGAACGACTTTCCTACAAACGATGCAAGTCTTCGAGCCATTACTTTTAGTGGAAAATCATCATGGAAAGGCATTGAAGGAGTAAGGCCACAAACAAGTCCATCAACTCCAACCCTCACAATATTTAACCAACAAAAAAAGGATGAAATAAGGCAGAAAGTCCCAGGTCAGGAGGATCATCTGGAAGAACTTGTAAAGCAGCTTCACATAAAGAACAGGGATCAAAGCCACAGGGATGAACATAGAGAAGTATTAAAGAAAAGAGTGCTGCAGAAGGATAATCGCGAAGATCATATGAAGCATCCTCACCAAAAGCACAGGGAGCTAAACATTATGGAAAGGGATCAAAAGAGAGGAGAACGTAAAAGGAACGGGATGCAGCAGATAGAAGCACAATTGCATAAAAAATCAGAACATGCAATCATACTGCAAGGATATAAAAAAAGAACAAATCCATTAGAAAAGAGGCATCCAGATAAACTTCAATCAAGAAAGCATCAACAGATCCCAAACAGTCCCAAATACCAACAGCCACCTATGGTCCATAAAGCAGAGATGGGAAACATATATCATCATATAGAAGAGTTGAAACAGAGAATTGGAAAACAGACAGTGCAGGAGAGAAATCAAAAGACAAGTGGGATCACATCCAAGAGTTTGACAAAACCAGTCCATGAAACATTCGCTTTTCCTAAGAAGCAGCATGATATGAGTCATGTAAGACGAGGTAAGAAAAGCTGCAACGAAACCATCACAGCTCAACACTCTAACGTACTTCCTAACAATAGATGCCCTGAAAATGATACTTCCAGAGAAAATAACTGTTATGATTTAAATGACAAAACAAGTGAGATAATCCACAAGAGCGTAGAACAAAATTCCTCTTCAAGGGACTCAGAAATTACATTTGAAGTTATGGAAAAGCAACATGCAAGGGAACCTGTGAAGAATGAACTCAAATTTACAAAAATGCAGAAAAGTGAGGGGCTTATAATTAATCAAACATATGCAATGAAACAGCAAAATCCAACAGTACAGGAAGTGGAACAAGAAAAACATGAAAAGCTTGATGTGCTAGATGGACTAGAAGTCCTCAGAGCAAATGAATCTAAAGAAGTGGAAGCTCATCTAGTTGAATCCAGAGAAACAGTAGCAATTATCCAGCCACTGAATGGCACACCAAATTCACATGAAGAGGATGATCAGGTTTTGACACCGCCCGTTCCTGCTGATGATGAATGCCATAGCTTGAAAGAGCCACAAATATCAGCTCCAAAAGTCAGTTGCCAGAAAACAATCTCCATTAATACTAGCAATAAGGAAGATCAAAGGTCAGTATTTGGCAGAGGTGAAATCAGCAGCTCCAAAATTGTAACAAATGCAGTAGAAGAAGCAGAACAATACAACATGAACACCTTATATCCCCCACATCTGGCGCACCTGCATAGTTTTTCCAAGACTAAGCAAGAGACACTGACAGAAAGAGAAAACCAACTTAAGCAGACGCTTATAACAAGTGAATGGTTCCTGAATGCAGCAGAAGCACTTTTCAAACTTAACATCCCCAGCTTCATTCTTCATGACAGTTGTCATCATAGCCATTTAAAAAATGGAAGAAATTTCACAGTAGATTGCAGTTACGAGCTCATGAAGCGAAAGGGCATACGGCAAGAGCTCAGCAAACGCCCTTGCACAAACATTTCTTTGAGGTCCAAAAAAATAGAATCTTTGGATGACTTAATCAAGCAGTTGCATAGAGACATCGAGGCATTGAAATTCTATGGAAGGAACGGTAATCCAGAATGTGAAGTACAAGACTACTTGCCCAGAATGCTTGAAAGTGATATCTATAACCAGGAACCTGACTTTAATAGTATGTGGGACTTGGGATGGAATGAGACCACATTCGTGTTTTTTGAAAGAGAGGAAGTTGTAAAGGATGTGGAAAAGAATATTCTGAGTGGACTACTCGATGAAGTCACTAGAGACCTTGTACATGTCTGTCATCTTTTGACAAAAAGAAGCATATAG 3276 40.23 MAKRSDFAQKLLDDLRLRKERMAAASQTSNRSKTTTIDAYSYSKQIHRGSKNTKTHGMSVPKTGNTINTRYGGGNKSPMTNDTSNQIVPYTRDRNSEQIGDLSMALAFALENGGKLRGNASSGNNLMLGFLQQIGRRSFQIGKMNKRGGLDRNHNVTGYFPTISHLHIKEISKGAHKLNQILRTCSNGSDFGRCSIEIGQELLKGAMDLEESLRMLVNLHEASEHVISPQQKNRIVLLENEEDAEENKDEALDQKLYQPRFSLEKLPLNSRSSQEVKGNGHNQKLATLRYSAEGGNFNQEEQPLTTVKLSFHRRSATCGHDVRTSNTREKVGISNVIAKLMGLDNLSDNSNYAHKDSGSKQKVTQKDLQPSTRGITKKAEPRTNITESRSNSGNPKPSISDKNSTVVNTIFVSQAMNDFPTNDASLRAITFSGKSSWKGIEGVRPQTSPSTPTLTIFNQQKKDEIRQKVPGQEDHLEELVKQLHIKNRDQSHRDEHREVLKKRVLQKDNREDHMKHPHQKHRELNIMERDQKRGERKRNGMQQIEAQLHKKSEHAIILQGYKKRTNPLEKRHPDKLQSRKHQQIPNSPKYQQPPMVHKAEMGNIYHHIEELKQRIGKQTVQERNQKTSGITSKSLTKPVHETFAFPKKQHDMSHVRRGKKSCNETITAQHSNVLPNNRCPENDTSRENNCYDLNDKTSEIIHKSVEQNSSSRDSEITFEVMEKQHAREPVKNELKFTKMQKSEGLIINQTYAMKQQNPTVQEVEQEKHEKLDVLDGLEVLRANESKEVEAHLVESRETVAIIQPLNGTPNSHEEDDQVLTPPVPADDECHSLKEPQISAPKVSCQKTISINTSNKEDQRSVFGRGEISSSKIVTNAVEEAEQYNMNTLYPPHLAHLHSFSKTKQETLTERENQLKQTLITSEWFLNAAEALFKLNIPSFILHDSCHHSHLKNGRNFTVDCSYELMKRKGIRQELSKRPCTNISLRSKKIESLDDLIKQLHRDIEALKFYGRNGNPECEVQDYLPRMLESDIYNQEPDFNSMWDLGWNETTFVFFEREEVVKDVEKNILSGLLDEVTRDLVHVCHLLTKRSI* 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5122630 5127015 + Chy4G072360.1 Chy04g00518 224417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00518 1091 Coils Coil 234 254 - -
Chy04g00518 1091 MobiDBLite consensus disorder prediction 564 594 - -
Chy04g00518 1091 PANTHER OS01G0228800 PROTEIN-RELATED 1 1083 - -
Chy04g00518 1091 MobiDBLite consensus disorder prediction 564 579 - -
Chy04g00518 1091 MobiDBLite consensus disorder prediction 48 82 - -
Chy04g00518 1091 PANTHER EXPRESSED PROTEIN 1 1083 - -
Chy04g00518 1091 MobiDBLite consensus disorder prediction 347 402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00518 - - - csv:101209549 2086.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00518 Chy-Chr4:5122630 Chy05g01372 Chy-Chr5:17815323 1.15E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g935 Blo01g01560 . Bda01g00533 . Bpe02g00395 . . Bma01g02317 . . Cma01g01904 . Car01g01485 . . . . . . . . . . . . . . . . . . . . . . Lsi04g01655 Csa03g04200 Chy04g00518 . . . . . . . . . . Cmo01g01966 . . . . . . Cpe02g00132 . . . . . . . Cla05g01949 Cam05g2095 . Cco05g2160 Clacu05g2087 Cmu05g1963 Cre05g2081 . . . Cme04g00581
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009852 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 3 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00518 Chy_Chr04 FPKM 25.797901 28.902719 29.768688 30.388042 24.553402 24.288818 19.711966 32.130539 33.848206 31.385708