Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00524 ATGGACAGTGATGACGATTTCCAGTTGCTTTCCTTTCCTCAGCTCGATTCCCCTCTGGTTTCCGGCAGGAAGCTGAAGCGGTTGAAGAAAGCTGCTACTGGTTTCTCCGACTATTTGCCGAAGATCGATCGTCAATTTTCGGGTGGATTGTTGGGGGAATTTTCGAGGATTGATGATCGGTTTGATGATGGCTTTAAGATTCGTGAATTGAGTGCGCTGGAATCTGAAGCCGACCATTCCGATAAGTTGAAAGGACAAGATCTGGATGACTCCGATGACCTTCAACAATCGGGATCTGGATCGACGGATTTGGATGATGGTGGTAATTTGGAAGTTAGTCCTGGCCTGGATGGTGAGGAAAAAGATTCTGGAGTGGACAAGTGCTTGGAATTTGATGCTGTGGCTGGAATTGAGGAAAAAGGTGGAGATCAAACTCCCGGGATGGGAGTGGAAAGTGGCGATGCGCTGGTGGATGAACTGGAGAAGAAACGGCCAAGTTTGGACGCTTTTGAGGACGAGAGAGAAGCAAAGAGGAGGAAATCGAAGAACAAAAGACTCAAGAGTAGTGGAGAGCCTGGAGATTTCAACCAGACTGCGGTTTCCAAAATAACTCTTGAGAAGGAGCGAAGAGAATACGTCGTGCAACTCCGTGCTGAGTCTCAGCGACTTTTGCGAGATACTAGAGGAGCGGCATTCAAGCCCATGCCAGTTGTCCAGAAGCCGATATCTTCAGTTTTGGAGAAGATCCGACGAAGGAAGCTTGAGCTCTCTACGAAATCTATCAATATTGAGCATTCCATTTTAGTCTGTGACGACGAAGATGATGACAACTATCAGTTCACAAAGGTTGTAAGCAAGCATAGGTTGTCTGTAGAAGGGAGGGCGGATTCTGTAGAAAAAGAATGTGGGGATATGGATAAGCATCCTGCCGATGAGGAGAATAAAAAAGACACAATGTGTATACATGAACGAAGTAATGGAACAAACATGCCCCCACGGAGGGAAAGGGCTACTGACGAGGTCACAGAACCATTTCAGGCTCCTGTTAATGACACTCAGGAACTCTTTTCTGATTCCCAAACAAGCATTGGAAATGATGTATCAAACGAGATGTCCAAAAATCCTCTGCAAGAAAATTTTACGCCATCTGTATTGGCAATGAATTTAAAGCTTGAATCTGCTCCTCTTGATGATGTGTTGAACGAGACATCCAGCAGTCATCTGCAAGAAAATTTCACACCATCGGTATTAGCAATGGATTTAAGGCTCGATTCTGCAGCGCTTGATGACTCTGATGAAGAAGAGGATAATGACAAGGAGAATGTTAATCCACATCCACATGGTTTGTCAGACTTGCCTTCATCAGCAAGCGGGGATCCTGTTAAAGCTTTTGTTGATGATGAAGCCGAGGAAGAAGATGACAGTGACCATGATATGCGCTTCCAAGATGACGAGGAAGACGATGATGCTGATTTAGAAGAGCTTCAAGATATGATAGCAACTGCTTACGATGAAAATCCATTAGACAATGAAAAATGCAATGAACTCCATCAGAAGTGGCTTGAACAGCAAGATGCTGCTGGAACAGAAGATCTTCTACAGAAATTGAAATATGGCTCAAAACTTACCAAACCATCTTTACTGGAAGATGAAAATAACGAGGGAGAAAATGATGATTTTGAATTTTGTGAAGCTGATGCAGAAGATTCTCTTCCACTGGATGTGGCTCGAATGAACATTAGAAAAGTAAAGCAAATGCTTCCTCAAATGTATACAGATAAAGATGATCCGTACATGTCTGATGATGAGGAAACAGAAAGGAGGCTAGAAAGAGAACGTGTATTTGATAAAGCCGATGGAAAATTCACATTTCTCTCGCCTGCTGAGGTTGAGAGCACCAGAGAAGTTTTTGGCCTTATCAAGAAACTGAATGTTGTACCTGATGTAAAGAAGAGACCTAAAGCACAATTGTTTTCAGACCCTCCACTAACCGGTGTAGGCAAGAACACATCTTCAAAGTCATCTTTCTTAGGCCGAAGTTCAAATTTCTCTTTTTCTTCATCCCATAAGCATGGATCATCAACCAACAGTCGTTCTTTCATTTTCGGTCGAGATGATACCAACAGCAGGAGCTCAATTCCAACAATGGAGGAATCTTCTGATCAGGGTCAGAATGAAAATAAATCTACAAGAATTTCTTCAGCTAAGTTTAGTTATTCTCAAGTGAGAGCAAGTGCACAGAACAGCGTACAAGAAATTAAGTCAGGGAGTTCATTATTTGATATATTGAGGCAATCTTCTTTGCAACTTCAACGTAAACCATGCACTTTTGGGGAAGAGTCTAGCCAGATGAGTTCTGCATTTGCATCATTTAAATTGGAGAAGACACACATGAAGAAGCCAATAAAGACTGAAGGGAGATTTTAA 2427 42.65 MDSDDDFQLLSFPQLDSPLVSGRKLKRLKKAATGFSDYLPKIDRQFSGGLLGEFSRIDDRFDDGFKIRELSALESEADHSDKLKGQDLDDSDDLQQSGSGSTDLDDGGNLEVSPGLDGEEKDSGVDKCLEFDAVAGIEEKGGDQTPGMGVESGDALVDELEKKRPSLDAFEDEREAKRRKSKNKRLKSSGEPGDFNQTAVSKITLEKERREYVVQLRAESQRLLRDTRGAAFKPMPVVQKPISSVLEKIRRRKLELSTKSINIEHSILVCDDEDDDNYQFTKVVSKHRLSVEGRADSVEKECGDMDKHPADEENKKDTMCIHERSNGTNMPPRRERATDEVTEPFQAPVNDTQELFSDSQTSIGNDVSNEMSKNPLQENFTPSVLAMNLKLESAPLDDVLNETSSSHLQENFTPSVLAMDLRLDSAALDDSDEEEDNDKENVNPHPHGLSDLPSSASGDPVKAFVDDEAEEEDDSDHDMRFQDDEEDDDADLEELQDMIATAYDENPLDNEKCNELHQKWLEQQDAAGTEDLLQKLKYGSKLTKPSLLEDENNEGENDDFEFCEADAEDSLPLDVARMNIRKVKQMLPQMYTDKDDPYMSDDEETERRLERERVFDKADGKFTFLSPAEVESTREVFGLIKKLNVVPDVKKRPKAQLFSDPPLTGVGKNTSSKSSFLGRSSNFSFSSSHKHGSSTNSRSFIFGRDDTNSRSSIPTMEESSDQGQNENKSTRISSAKFSYSQVRASAQNSVQEIKSGSSLFDILRQSSLQLQRKPCTFGEESSQMSSAFASFKLEKTHMKKPIKTEGRF* 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5172289 5176114 + Chy4G072420.1 Chy04g00524 224423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00524 808 MobiDBLite consensus disorder prediction 345 376 - -
Chy04g00524 808 MobiDBLite consensus disorder prediction 75 91 - -
Chy04g00524 808 MobiDBLite consensus disorder prediction 92 106 - -
Chy04g00524 808 MobiDBLite consensus disorder prediction 300 376 - -
Chy04g00524 808 MobiDBLite consensus disorder prediction 465 493 - -
Chy04g00524 808 PANTHER DNA LIGASE-LIKE PROTEIN 1 398 - -
Chy04g00524 808 PANTHER DNA LIGASE-LIKE PROTEIN 397 807 - -
Chy04g00524 808 Coils Coil 167 187 - -
Chy04g00524 808 MobiDBLite consensus disorder prediction 300 341 - -
Chy04g00524 808 MobiDBLite consensus disorder prediction 655 731 - -
Chy04g00524 808 MobiDBLite consensus disorder prediction 136 200 - -
Chy04g00524 808 MobiDBLite consensus disorder prediction 155 179 - -
Chy04g00524 808 MobiDBLite consensus disorder prediction 663 731 - -
Chy04g00524 808 MobiDBLite consensus disorder prediction 75 124 - -
Chy04g00524 808 MobiDBLite consensus disorder prediction 423 493 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00524 - - - csv:101210293 1393.64
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g923 . . . . . . . Bma01g02312 . . Cma01g01897 Cma09g00165 Car01g01480 . . Cpe06g00118 . . . . . . . . . . . . . . . . . . . Lsi04g01650 Csa03g04195 Chy04g00524 . . . . . . . . . . Cmo01g01962 Cmo09g00162 . . . Car09g00145 . Cpe02g00137 . . . . . . . Cla05g01953 Cam05g2099 Cec05g2108 Cco05g2165 Clacu05g2091 Cmu05g1967 Cre05g2085 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008724 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00524 Chy_Chr04 FPKM 11.230272 13.416383 21.739769 22.542118 12.168546 12.401271 12.561629 42.317661 34.591183 43.137402