Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00532 ATGGAGAATTTGTCGCAGAGAGACAGCATTCTTTTGGGTTATTCACTTCAGAGATCATTTGCCAACTCTTCATCTCCAAGAGCTTCCAATCGGAATTCAGACGATGTTGATTTTCACGACGTGTTCGGTGGTCCTCCGAGGAGGCGGTCGTCTGTTCATGAAACGAGATATAGCTTCTCCGAGACAGGGGACTCCTTTGCATTGAAAGGTGGCGAGGATGAAGCACTACCGGGCCGGAGTGGCCCTTGGTCTGGTTTGAATGAGAAACCTGTGTTTGGTGAAGAAGGTGTACACGGGCGGCGATTTCCGAGTGATGATTTTTATGATGATATCTTTAAAGGCGATGAATCGGTGAATTCTTCTCCTCGCCGGGGTGACATTTTCTCTCCGAATCCTGGTTCAAGAGTTCTAAGTCCTGCTAGACCTCTTCCACCGCCGGTAGAACCATTCGGAAGTTCTTCCCTCCCTGCTCAATTAAGCCTACCATCACGATTAGCCAAAGGGACTGATTTACCAGCCTTCGGATCGAGCTCCTTAAGAAACAAGGACAATGTTTCGAATGGAAGTCATACAAATTCTCCTAGGTTCACTCTTTCTAGATTTTCTTTTAGCACATCGAGCCATCGTTTCGAGGATCCTAAAACTGATTATGATTTGTTGGATCGTACTGGTGTTTTGTCATCTGAATTCCAAGAAAATGGCGGTGATGAAGCATTGTCCTTCATAAAGTCTGGAAATGGATTGAGTGGGAACAGTTTAACAAAGGGAGAAGAAGATAGTTTAGAAGAATCAAATGGTGGTGGTCAATTTCAGTTCCATTTCTCAATTTACAAATGGGCAAGTAAAGGGGTGCCTCTGATGATGCCATCGAGAGGGAACGGGCCAAGATTAAGAGAAAAGACTCTACTAAGAAGAAGCTCAAGCTCGACCGATAGGTTATTGAAGGCGAAAAATGAAATGCATTCCCCAACATCGACTATACAGAATATTGATTTTCCTTCAGTTTTTCATGAAACAACAAAGGTTGATGATGAAAAAGGAACTGATATACTGCCTGACACGGGTAATCTTGATCAAAGACAAAGTTCATTCACACCTTCAAAAAACTTGAGCAGACAAAGTTCTCGCACGGCTGTTGGCAGTGATAACATCAGTCGCCTCCTAACGGAGAAAGAGAAACCTCATTCTTTACCTAAGAAAGTTTCAAGTGAAAAGCCAGAGAAAAAGATGACTTCGAGGACAATCGAAGATCAAAAGCATGAGGCTAAATCTTTAAGTTCCTTTCTTCTCTACAGTGATAGTGAACAAAGTGAAGAGACGATAGCCAAAGAGTATCGTAAAGGAGAAATCATGGCAAAAGGTGACATGAAATCATCGACTCTCTCTGATTTAAGTAGTAGTCCAAAGAAACTAGAAAAACAAACGTCATTGAGAAATTCAAAAGTGAAAAAACCTACTGTCCCAAGTTCAGACGTGGAATCTGGACATAACATTGGCAGAAAGAAAGTTGGTGGAAAAATTTCAGAGTTTGTTAAGCTTTTCAACCAAGAACCTACATCGAAACCCCAGGATGTTGTCAATTTAGAAAATGATAGCTCTAAAATGAAACAGGAAAGTGAATCAAAGGCTCCGACTGTTAACAAAATAAGGAAGGATGAGAAACCCAAGTTGAATAAGAACACAGATGCTTCCATCAAGGGAGATGATGTTTCCAAGAAATCAGTGGATGATAACTCTACTAAAAAAGCTGCTAGCTTCAAAAATAACTTTGCTTCTTCCAATGAGAGTAGTCCAGCTCCAAACACAGTTCACGTTCCTGATGTCACAAAGTCTACAGTTCCAGAAGTGGAGGAGCCCTTTCAGGATAATTTCTCGGTACAAGAGTTACCACAAGATTATGAAGATTCCACAGAAACAAACAATGGTCGTGAAGAAGTACAAGCTCTCGATACTAAAATACGACAATGGTCAAGCGGGAAGGAAGGGAATATTCGTTCCCTGCTGTCAACTTTGCAATATGTTCTTTGGCCCAAGAGCGGATGGAAACCCGTTCCTCTTGTTGATATAATCGAAGGAAATGCAGTGAAAAGATCTTATCAAAAAGCTTTGTTATATCTACACCCTGATAAGCTACAACAGAAGGGTGCTTCATCAGATCAAAAATATATTGCAGCAAAAGTTTTTGAAATATTACAGGAGGCTTGGATTCATTTCAATACATTGGGTGGATTATGA 2235 41.16 MENLSQRDSILLGYSLQRSFANSSSPRASNRNSDDVDFHDVFGGPPRRRSSVHETRYSFSETGDSFALKGGEDEALPGRSGPWSGLNEKPVFGEEGVHGRRFPSDDFYDDIFKGDESVNSSPRRGDIFSPNPGSRVLSPARPLPPPVEPFGSSSLPAQLSLPSRLAKGTDLPAFGSSSLRNKDNVSNGSHTNSPRFTLSRFSFSTSSHRFEDPKTDYDLLDRTGVLSSEFQENGGDEALSFIKSGNGLSGNSLTKGEEDSLEESNGGGQFQFHFSIYKWASKGVPLMMPSRGNGPRLREKTLLRRSSSSTDRLLKAKNEMHSPTSTIQNIDFPSVFHETTKVDDEKGTDILPDTGNLDQRQSSFTPSKNLSRQSSRTAVGSDNISRLLTEKEKPHSLPKKVSSEKPEKKMTSRTIEDQKHEAKSLSSFLLYSDSEQSEETIAKEYRKGEIMAKGDMKSSTLSDLSSSPKKLEKQTSLRNSKVKKPTVPSSDVESGHNIGRKKVGGKISEFVKLFNQEPTSKPQDVVNLENDSSKMKQESESKAPTVNKIRKDEKPKLNKNTDASIKGDDVSKKSVDDNSTKKAASFKNNFASSNESSPAPNTVHVPDVTKSTVPEVEEPFQDNFSVQELPQDYEDSTETNNGREEVQALDTKIRQWSSGKEGNIRSLLSTLQYVLWPKSGWKPVPLVDIIEGNAVKRSYQKALLYLHPDKLQQKGASSDQKYIAAKVFEILQEAWIHFNTLGGL* 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5296910 5300406 + Chy4G072500.1 Chy04g00532 224431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00532 744 MobiDBLite consensus disorder prediction 174 191 - -
Chy04g00532 744 MobiDBLite consensus disorder prediction 619 645 - -
Chy04g00532 744 MobiDBLite consensus disorder prediction 137 151 - -
Chy04g00532 744 MobiDBLite consensus disorder prediction 304 327 - -
Chy04g00532 744 MobiDBLite consensus disorder prediction 444 580 - -
Chy04g00532 744 SUPERFAMILY Chaperone J-domain 640 735 IPR036869 -
Chy04g00532 744 MobiDBLite consensus disorder prediction 531 580 - -
Chy04g00532 744 MobiDBLite consensus disorder prediction 21 100 - -
Chy04g00532 744 MobiDBLite consensus disorder prediction 172 191 - -
Chy04g00532 744 PANTHER J DOMAIN-CONTAINING PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1 1 737 - -
Chy04g00532 744 MobiDBLite consensus disorder prediction 113 155 - -
Chy04g00532 744 MobiDBLite consensus disorder prediction 304 318 - -
Chy04g00532 744 Gene3D DnaJ domain 640 743 IPR036869 -
Chy04g00532 744 MobiDBLite consensus disorder prediction 386 423 - -
Chy04g00532 744 MobiDBLite consensus disorder prediction 354 384 - -
Chy04g00532 744 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 737 - -
Chy04g00532 744 MobiDBLite consensus disorder prediction 458 473 - -
Chy04g00532 744 MobiDBLite consensus disorder prediction 343 427 - -
Chy04g00532 744 MobiDBLite consensus disorder prediction 244 265 - -
Chy04g00532 744 MobiDBLite consensus disorder prediction 513 530 - -
Chy04g00532 744 MobiDBLite consensus disorder prediction 32 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00532 - - - csv:101211029 1337.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00120 Chy-Chr2:872254 Chy04g00532 Chy-Chr4:5296910 3.98E-30 dispersed
Chy04g00487 Chy-Chr4:4656723 Chy04g00532 Chy-Chr4:5296910 6.68E-33 dispersed
Chy04g00532 Chy-Chr4:5296910 Chy12g00358 Chy-Chr12:3848857 9.80E-33 dispersed
Chy04g00532 Chy-Chr4:5296910 Chy02g00633 Chy-Chr2:3871269 1.45E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g905 . . Bda01g00541 . . Bpe04g00208 Bma04g00202 Bma01g02308 . . Cma01g01891 Cma09g00172 Car01g01475 . . . . . . . . . . . . . . . . . . Cone4ag1897 . Cone17ag1326 . Lsi04g01642 Csa03g04186 Chy04g00532 . . . . . . . . . . Cmo01g01954 Cmo09g00167 . . . Car09g00152 . Cpe02g00141 . . . . . . . Cla05g01961 Cam05g2110 Cec05g2121 Cco05g2174 Clacu05g2099 Cmu05g1976 Cre05g2095 . . . Cme04g00612
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005505 1 5 1 2 1 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00532 Chy_Chr04 FPKM 50.6992 52.327274 42.212044 45.49152 38.297302 42.292957 47.739357 30.885107 31.157633 41.702507