Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy04g00538 | ATGCTCTGGTACTCTTCAACCCCCATTCATCGCTTGTATTCTCATCTACTTCTTCGGAACTCGCTTCACGTATCTCGAACTCTTCAATGGAAGTCCCGAGACGAATTGAAGCTGAGCCAACCGGATTTGGTTGACCGCATTTCCCGCCTCCTAGTCCTTCGACGATTCGATGCCCTCGCCAACCTCTCATTCACTTTCTCCAATGAACTGATGGATTTGGTGCTTCGGAATCTCAGATTAAACCCTGATGCTTCCTTAGAGTTCTTCAAATTGGCATCTAAACAACCGAAATTTAGACCGGATGTTAGTTCCTATTGCAAGATTGTCCATATATTATCGAGGGCTCGAATGTACAAGGAGGTTAGGGTGTATTTGAATGAACTTGTGGTTCTATGCAAGAACAATTACATTGCATCTGCAGTGTGGGATGAGCTTGTAAGCGTTTATAGAGAATTTTCGTTTTCTCCTACTGTGTTTGATATGATTTTGAAGGTTTATGCTGAGAAAGGAATGACAAAATTTGCACTGTGTGTGTTTGACAATATGGGTAAGTGTGGTCGTGTTCCAAGTTTGAGGTCCTGCAATAGTTTATTGAGTAATTTGGTCCAGAATGGAGAAGCATTCAAGGCTCTGCTTGTTTATGAACAAATGATTGCATTAGGCGTACTTCCCGATATTTTTAGTTATACAATAATGGTGAATGCTTATTGCAAGGAAGGGAGAGTGGATGAAGCCTTCAATTTTGTGAAAGAAATGGAGAGGTCATGCTGTGAGCCAAATGTAGTAACTTACAATAGTTTGATTGATGGTTATGTCAGTCTAGGAGATGTTTGTGGGGCAAAAAAGGTGTTAGCTTTGATGTCTGAAAAGGGCATTCCTAAAAATTCCAGAACTTATACTTTGTTGATAAAAGGTTATTGCGAGAGAGGTCAGATGGAGCAGGCTGAGAAGCTAATTGGGTACATGGAGGAGAAGAATTTGTTTGTCGACGAGCATGTTTATGGAGTGTTAATACATGCATATTGCAGCGCTGGTAGAGTAGATGATGCTCTTAGAATAAGGGATGCAATGTTGAAAGTAGGCTTAAAAATGAATACTGTAATTTGCAACTCACTTATTAATGGGTATTGTAAGCTTGGTCATGTTAATAAAGCTGCAGAAGTGCTCGTTAGTATGAAAGATTGGAACTTGATACCGGATTCTTATGGCTATAACACTCTTCTTGATGGTTTTTGTAAACAAGAAGATTTCAATGAGGCTTTCAAACTTTGTGATGAGATGCATAACAAAGGAGTTAATTTTACTGTTGTGACTTATAATACCCTCCTTAAGAATTTGTTCCATGTTGGTTATGTTGAGCACGCCTTACATATTTGGAACTTAATGCATAAAAGAGGTGTGGCACCTAACGAGGTTACCTATTGTACACTTTTAGATGCATTTTTCAAAGTAGGTACTTTTGATAGAGCTATGATGATATGGAAGGATGCACTATCGAAGGGTTTTACGAAGAGCAGAACTCTTTATAACACCATGATTTGTGGCTTTTGTAAGATGGAGAAATTAGTGCAAGCACGAGAGATTTTTCTTAAGATGAAGGAACTGGGTTTTCCACCTGATGAAATAACATATCGAACTCTAATTGATGGATATTGTAAGGTTGGAAATTTGGTAGAAGCCTTAAAACTGAAGGACATGTCTGAGAAGGACGGAATAAGTTCTTCCACTGAAATGTACAATTCTCTTATTACGGGTGTTTTTAGATCTGAAGAATTACAGAAATTGAATGGTCTTCTAGCTGAGATGAAGAACCGAGAACTATCTCCCAATGTTGTAACTTATGGCTCCCTTATAGCTGGTTGGTGTGACAAAGGGATGATGGACAAAGCATATAATGCATACTTTAAGATGATCGACGAAGGGATTGCACCTAATATTATCATCGGCAGCAAAATTGTAAGTAGTCTGTATCGACATGGTAAGATTGATGAAGCGAATTTGATCCTTCATCAAATGGCAGATATTGATCCTATTGCAGCTCATGCACACTCTATAGAATTGCCCAAGTCTGATTTGAGACATCTCGAAACTCAAAAAATTGTGGATTCTTTTGGCGAAAAGGCCATGAGCATCCCTATGTCGAACAATATTGTGTATAATATTGCAATTACAGGACTATGCAAGTCTAAGAACATCGATGATGTCAGAAGGATTTTGTCAGATTTGTTACCTAAAGGCTTTCGTCCCGATAATTATACGTATTGTTCTCTTATTCATGCTTGCTCTGCTGTTGGTAAGGTGAATGAAGCCTTTTGTCTAAGAGATGACATGATAAATGCAGGTCTTGTTCCAAATATTGTCGTGTACAATGCTCTTATAAATGGTTTATGCAAGTCAGGGAATCTGGATCGAGCTCGGAGACTGTTCAATAAACTGGCCCGAAAGGGTTTATCACCCACCGTTGTTACGTATAACACTCTCATCGATGGATATTGCAAGGGTGGTAGAACAACAGAGGCTCTCAAACTTAAGGATAAAATGAGAGAAGAAGGCATTTGTCCCTCTTCTATTACCTATTCTACCTTGATTCATGGTCTTTATATGGAAGGAAAATCTGAACAATCCGTGGGGCTTTTGAATGAAATGATGAAGGCAGGGAAAGACTAA | 2667 | 38.92 | MLWYSSTPIHRLYSHLLLRNSLHVSRTLQWKSRDELKLSQPDLVDRISRLLVLRRFDALANLSFTFSNELMDLVLRNLRLNPDASLEFFKLASKQPKFRPDVSSYCKIVHILSRARMYKEVRVYLNELVVLCKNNYIASAVWDELVSVYREFSFSPTVFDMILKVYAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGVLPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPKNSRTYTLLIKGYCERGQMEQAEKLIGYMEEKNLFVDEHVYGVLIHAYCSAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLIPDSYGYNTLLDGFCKQEDFNEAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGYVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSRTLYNTMICGFCKMEKLVQAREIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSEKDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDEGIAPNIIIGSKIVSSLYRHGKIDEANLILHQMADIDPIAAHAHSIELPKSDLRHLETQKIVDSFGEKAMSIPMSNNIVYNIAITGLCKSKNIDDVRRILSDLLPKGFRPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALKLKDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAGKD* | 889 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 5422414 | 5425080 | + | Chy4G072560.1 | Chy04g00538 | 224437 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 785 | 819 | IPR002885 | - | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 225 | 259 | IPR002885 | - | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 470 | 504 | IPR002885 | - | |
| Chy04g00538 | 888 | Gene3D | Tetratricopeptide repeat domain | 567 | 694 | IPR011990 | GO:0005515 | |
| Chy04g00538 | 888 | Gene3D | Tetratricopeptide repeat domain | 714 | 888 | IPR011990 | GO:0005515 | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 435 | 469 | IPR002885 | - | |
| Chy04g00538 | 888 | Pfam | PPR repeat | 193 | 222 | IPR002885 | - | |
| Chy04g00538 | 888 | Pfam | PPR repeat | 472 | 502 | IPR002885 | - | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 610 | 644 | IPR002885 | - | |
| Chy04g00538 | 888 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 823 | 886 | - | - | |
| Chy04g00538 | 888 | Gene3D | Tetratricopeptide repeat domain | 448 | 566 | IPR011990 | GO:0005515 | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 155 | 189 | IPR002885 | - | |
| Chy04g00538 | 888 | PANTHER | - | 13 | 830 | - | - | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 505 | 539 | IPR002885 | - | |
| Chy04g00538 | 888 | SUPERFAMILY | TPR-like | 203 | 535 | IPR011990 | GO:0005515 | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 752 | 786 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 262 | 294 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 193 | 226 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 437 | 471 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 298 | 330 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 404 | 432 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 227 | 261 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 508 | 541 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 367 | 400 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 472 | 502 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 857 | 886 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 717 | 750 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 333 | 365 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 542 | 573 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 822 | 855 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 612 | 646 | IPR002885 | - | |
| Chy04g00538 | 888 | TIGRFAM | PPR: pentatricopeptide repeat domain | 787 | 821 | IPR002885 | - | |
| Chy04g00538 | 888 | Pfam | PPR repeat family | 508 | 553 | IPR002885 | - | |
| Chy04g00538 | 888 | Pfam | PPR repeat family | 784 | 833 | IPR002885 | - | |
| Chy04g00538 | 888 | Pfam | PPR repeat family | 294 | 343 | IPR002885 | - | |
| Chy04g00538 | 888 | Pfam | PPR repeat family | 577 | 622 | IPR002885 | - | |
| Chy04g00538 | 888 | Pfam | PPR repeat family | 715 | 761 | IPR002885 | - | |
| Chy04g00538 | 888 | Pfam | PPR repeat family | 225 | 272 | IPR002885 | - | |
| Chy04g00538 | 888 | Pfam | PPR repeat family | 399 | 445 | IPR002885 | - | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 750 | 784 | IPR002885 | - | |
| Chy04g00538 | 888 | SUPERFAMILY | HCP-like | 621 | 884 | - | - | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 820 | 854 | IPR002885 | - | |
| Chy04g00538 | 888 | Gene3D | Tetratricopeptide repeat domain | 360 | 447 | IPR011990 | GO:0005515 | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 295 | 329 | IPR002885 | - | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 330 | 364 | IPR002885 | - | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 715 | 749 | IPR002885 | - | |
| Chy04g00538 | 888 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 13 | 830 | - | - | |
| Chy04g00538 | 888 | PANTHER | - | 823 | 886 | - | - | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 260 | 294 | IPR002885 | - | |
| Chy04g00538 | 888 | Gene3D | Tetratricopeptide repeat domain | 62 | 218 | IPR011990 | GO:0005515 | |
| Chy04g00538 | 888 | Gene3D | Tetratricopeptide repeat domain | 219 | 286 | IPR011990 | GO:0005515 | |
| Chy04g00538 | 888 | Gene3D | Tetratricopeptide repeat domain | 287 | 359 | IPR011990 | GO:0005515 | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 400 | 434 | IPR002885 | - | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 575 | 609 | IPR002885 | - | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 190 | 224 | IPR002885 | - | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 365 | 399 | IPR002885 | - | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 855 | 888 | IPR002885 | - | |
| Chy04g00538 | 888 | Pfam | PPR repeat | 851 | 882 | IPR002885 | - | |
| Chy04g00538 | 888 | Pfam | PPR repeat | 361 | 393 | IPR002885 | - | |
| Chy04g00538 | 888 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 540 | 574 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy04g00538 | - | - | K17964 | csv:101211773 | 1732.23 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy04g00538 | Chy-Chr4:5422414 | Chy01g00040 | Chy-Chr1:295158 | 1.73E-72 | dispersed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g881 | . | . | . | . | . | . | Bma04g00196 | . | . | . | . | . | Car01g01470 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Chy04g00538 | . | . | . | . | . | . | . | . | . | . | Cmo01g01949 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009718 | 1 | 2 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 2 | 1 | 1 | 1 | 3 | 1 | 1 | 31 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chy04g00538 | Chy_Chr04 | FPKM | 21.842283 | 25.929136 | 19.349707 | 18.70809 | 21.953724 | 24.05468 | 24.357435 | 22.032013 | 21.932661 | 20.625328 |