Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00545 ATGTTCTCAAAAGCCTTCACGTTTAGTAAAAATATTCAGGACTTGGCTTCTGAAATGTTCCCAGGCCAAGTTGAAGCTGCTTTGAAAGAACCACCTGGTGCCAAAACGGCGCCGGATAGAGTTATCGTCGCCGTCAAGGCTGAGAGAGTGATTTCCAAATCTGCACTGGCTTGGGCTCTTACTCATGTCGTCCGTCCTGGTGACTGTATAACTCTACTCGCCGTCTTCTCTGTCGAGAAAACTGGCAGAAGATTCTGGAATTTTCACAGATGGAGCGGGGATTGTGCGAGTGCTGTCCAAGAGAATCTGCCGGATCGAGTACACGAGATCTCCGAGTCTTGTTCTCAGATGGTGCTTCATTTTCACAATCAAGTTGAGGTTCAAGTGAGGATTAAAGTGGTCACAGGAACTCAAGGAGGATCTGTCGCTTCTGAAGCAAAGTTAAAAGGAGTTAACTGGGTCATACTAGACAGGAAATTGAAGAACGAGGTAAAGAGTTGCCTGGAAGAACTTAGCTGCAATATTGTTTCTATGAAAGGATCTCAACCGAAAGTTCTGAGACTTAACTTGGAGTGCTGGAGTGAACCTCAAACTCCCTTTTTTTCAGCTAATTCTTCTCCTGTTCGAAAAGTTCAACAAAATAGGATGAAGCAGACAACTCCATTAGCAAGCAGACCAGAAGAAGAACCCGGTGCCTCATTCAGAAAATCCTCAAAAGAAGTGTCAAAATTGGGTACTGAGGCGGTGTCCTCTATTTTCCTTGTATATGAGCAAAACCCGCTATATGAAGGAAACTTGAAAGGAAATCATTTGCCAATTAATGAGACTGACGATTTAAGCATGTCATTATCTTCATCCACCCAAATGGAAGAAAAAGTTCTCTCTCTACCTCCAACATCTGTGGCCTCAAATCAAAAATGTGTGTATTGGATTTCTCAGAACCATAACATTTCGGAAGGAAAAACTTTATCCAAGTCCAAAAGAAGATTCCTTAGATTTGCATCAACTCCGAAGGTGCCATTCAGTAATCCTACAAGTCTTGAGAAGAGTACGACTTTTGAAGATATGAGGCTCAACCAGTCTGAGAGAAAAGACTACATTGTGGACTCAAATATCAGGGATGCTGTCTCCTTGGGCAGAGCATCCTCTGCACCCCCTCCTCTGTGTTCAATATGTCAACACAAAGCACCAGCTTTCGGAAAACCTCCTAGACAGTTCTCACTCAAAGAGCTCGAAGAAGCAACTGACAGATTTTCGGATATGAACTTCTTAGCAGAAGGTGGTTTCGGAATTGTTCATAGAGGAATCTTGAGAGACGGCCAAGTTGTAGCCGTGAAGCAGTTGAAATGTGGAGGCTTACAAGCAGATGCTGATTTTTCTCGGGAAGTTCGAGTGTTGAGTTGTGCACAACACAGAAATGTTGTGTTGCTGATTGGATTTTGTATAGAGGACACAATGAGGTTATTGGTTTATGAGTACATATGCAATGGTTCGTTGGATTTCCATTTACATGGGAATGGAAGCCAGTTAGATTGGCATTCAAGGCAAAAAATAGCAATAGGAGCAGCGCGAGGTTTGCGTTATCTTCATGAAGATTGCAGAGTCGGGTGTATAGTGCATAGAGACATGAGACCTCACAATATCCTCCTAACACATGATTTTGAACCCATGGTTGCTGATTTCGGACTGGCGAGATGGCATTCTAAATGGTCTACCAGTGTTGAGGAGCAAGTCATTGGAACTTCAGGGTATCTAGCACCAGAGTACATCAATGGCGGTATGGTATCACATAAAGTGGATGTGTATGCATTTGGCATGGTTTTATTAGAGTTGATTAGTGGCAAAAGAAGCTGTGAGCTACACCGTCTAGAGGGAAAACAATTCATATCAGACTGGTTCCACCCTATCTCTGCCTTGCAAATTCAACATTTACTAGCTAGTAGTAATCATTTAGTAGATCCATGCATGGCATCCGAGCAATCCCCCGACTTCTATTATCAACTGCATTCTATGGTTCGTGCCGCTTCCTTGTGTCTATGTCCAGATCCTGAATCAAGACCCTCAATGTCAAAGATTCTTCGAGTACTCGAAGGAGGAGATCCAGTTGTTCCTCTTGGTTTAGACTTCGACCCAGTTGGCTGCAGAAGTGCACACTTGGATGGTCTGACGTCTCACAACCAAATCGAAGCAAGAAGAAGCCATACTCGTACACTCTCACAATGA 2223 43.41 MFSKAFTFSKNIQDLASEMFPGQVEAALKEPPGAKTAPDRVIVAVKAERVISKSALAWALTHVVRPGDCITLLAVFSVEKTGRRFWNFHRWSGDCASAVQENLPDRVHEISESCSQMVLHFHNQVEVQVRIKVVTGTQGGSVASEAKLKGVNWVILDRKLKNEVKSCLEELSCNIVSMKGSQPKVLRLNLECWSEPQTPFFSANSSPVRKVQQNRMKQTTPLASRPEEEPGASFRKSSKEVSKLGTEAVSSIFLVYEQNPLYEGNLKGNHLPINETDDLSMSLSSSTQMEEKVLSLPPTSVASNQKCVYWISQNHNISEGKTLSKSKRRFLRFASTPKVPFSNPTSLEKSTTFEDMRLNQSERKDYIVDSNIRDAVSLGRASSAPPPLCSICQHKAPAFGKPPRQFSLKELEEATDRFSDMNFLAEGGFGIVHRGILRDGQVVAVKQLKCGGLQADADFSREVRVLSCAQHRNVVLLIGFCIEDTMRLLVYEYICNGSLDFHLHGNGSQLDWHSRQKIAIGAARGLRYLHEDCRVGCIVHRDMRPHNILLTHDFEPMVADFGLARWHSKWSTSVEEQVIGTSGYLAPEYINGGMVSHKVDVYAFGMVLLELISGKRSCELHRLEGKQFISDWFHPISALQIQHLLASSNHLVDPCMASEQSPDFYYQLHSMVRAASLCLCPDPESRPSMSKILRVLEGGDPVVPLGLDFDPVGCRSAHLDGLTSHNQIEARRSHTRTLSQ* 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5499304 5503423 - Chy4G072630.1 Chy04g00545 224444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00545 740 Gene3D Phosphorylase Kinase; domain 1 389 493 - -
Chy04g00545 740 MobiDBLite consensus disorder prediction 203 221 - -
Chy04g00545 740 ProSitePatterns Tyrosine protein kinases specific active-site signature. 538 550 IPR008266 GO:0004672|GO:0006468
Chy04g00545 740 MobiDBLite consensus disorder prediction 203 240 - -
Chy04g00545 740 SUPERFAMILY Protein kinase-like (PK-like) 400 696 IPR011009 -
Chy04g00545 740 PANTHER OS01G0253100 PROTEIN 35 731 IPR045271 GO:0004714|GO:0006468
Chy04g00545 740 Gene3D Transferase(Phosphotransferase) domain 1 494 701 - -
Chy04g00545 740 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 35 731 - -
Chy04g00545 740 Pfam Protein kinase domain 421 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00545 740 ProSiteProfiles Protein kinase domain profile. 418 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00545 Chy-Chr4:5499304 Chy05g01369 Chy-Chr5:17799292 1.93E-78 dispersed
Chy02g01204 Chy-Chr2:8682493 Chy04g00545 Chy-Chr4:5499304 5.06E-174 transposed
Chy04g00641 Chy-Chr4:7348350 Chy04g00545 Chy-Chr4:5499304 0 transposed
Chy10g00690 Chy-Chr10:13291675 Chy04g00545 Chy-Chr4:5499304 2.32E-74 transposed
Chy11g00389 Chy-Chr11:3684568 Chy04g00545 Chy-Chr4:5499304 8.40E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71177 PF00069 Pkinase 5.90E-42 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00545 - - csv:101207605 1483.77