Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00548 ATGGAACCGCTGTTTGCTTTAGTATCCTCTCCCCATACTGGAGTTGGAATAATGATGGCTGTATTTCTCTTTATACTGTTTTCCTATGCTCTCTTCAGAATATTATCCAGATCCCAACATGGGAAGAAACTGCAGCCACCTAAAGCCGGTGGTGCCTGGCCGGTGATTGGTCATCTTCATCTACTAGGTGGGTCAGAACCACACAAAGTCATAGAGGCTATGGCAGATGCTCATGGACCAATTTTCACGTTGAAATTGGGAATGCATAGAGCAGTGGTTGTAAGCAATTGGGAAATAGCAAAAGAGTGCTTTACTACAAATGACAGAATATTTGCATCCCGCCCCAAACTAACTGCCTCAAAGCTTCTAGGCTATAATAATTCCATGTTTGGGTTCAGCGAGTATGGTCCATTCTGGCGCCACATGCGCAAAATAGCCGTGCATGGTCTCCTCGCGAGCCACTACATGAAGCAGCAGCTTCAACTCATCTTAGAATCGGAGATTCAGAGTTCAGTTGGAAAATTATATGATTTATGGGCGAATCACACAAAAAGAAGCGAGCAAGCGTTATTATTGGTGGAAATGAATACATGGTTTCAAGACATAACTCTCAACACCATGTTTAGGATGGTGGTTGGAAAGCGATTCTCAACGGATATGGAAGGCAGTGGAAACCAAGATTACCGAAAGGTATTTCGGGATTTTGTTAAATCCTTTGGGGATTTTGTTCCGGCGGATTCGTTTCCATTTTTAAGTTGGTTGGATTTGGGAGGATATGAAAAGGCTATGAAGAAGACGAGTGAGGCGTTGGATGAGGTGTTGGATAATTGGATCAAAGAGAAGAAGAATAATTCAGGTGACCATCAACAAGATTTCATGGACATTCTGCTTTCAGCTGTTGAAGTGGATGAAGAACTTTCCGACTATGATGGAGACTCGGTCGTAAAAGCTAATTGTTTGAGCATGATATTGGCTGGATCGGATACAACAACAACAACAATGATATGGGCTCTTTCTTTACTTGTTAACAATGAAGAAGCACTTAAGAAGGTTCAACTTGAATTAGAAGAACAAGTTGGAAGACAAAGAAAAGTAAAAGCAACAGATTTAAATGATCTAATATATCTCCAAGCCATTGTGAAGGAAACGTTGCGTTTGTATCCTGCAGCACCATTGTCAGTCCCTCATGAATCTACAGAAGATTGCAACATTATGGGCTACAGTATCTCTGCAAGGACACGCCTAATAGTAAATCTTCAAAAGCTACAAAGAGATCCATTAGTTTGGAAGGATCCTAATGAGTTTAAACCTGAAAGATTTCTAACAGCTAAAAAAGACATGGACTTTAAAGGACTAAATAATCCTCAACTGATTCCATTTGGAAGTGGTAGAAGGGCGTGTCCTGGAATATCGTTTGCCCTCGAAGTTGTGCCTCTAACGCTTGCGAATTTGATTCATGGGTTTGAAATTGGGAGGCCATCAAAGGAGCTACTCAACATGGAGGAGAACTTTGGGTTTATTAGTTCTAGAAAAGTTCCACTACAAGTTGTTTTAACTCCACGCCTATCAGCACAAGATTATAAATGA 1587 41.02 MEPLFALVSSPHTGVGIMMAVFLFILFSYALFRILSRSQHGKKLQPPKAGGAWPVIGHLHLLGGSEPHKVIEAMADAHGPIFTLKLGMHRAVVVSNWEIAKECFTTNDRIFASRPKLTASKLLGYNNSMFGFSEYGPFWRHMRKIAVHGLLASHYMKQQLQLILESEIQSSVGKLYDLWANHTKRSEQALLLVEMNTWFQDITLNTMFRMVVGKRFSTDMEGSGNQDYRKVFRDFVKSFGDFVPADSFPFLSWLDLGGYEKAMKKTSEALDEVLDNWIKEKKNNSGDHQQDFMDILLSAVEVDEELSDYDGDSVVKANCLSMILAGSDTTTTTMIWALSLLVNNEEALKKVQLELEEQVGRQRKVKATDLNDLIYLQAIVKETLRLYPAAPLSVPHESTEDCNIMGYSISARTRLIVNLQKLQRDPLVWKDPNEFKPERFLTAKKDMDFKGLNNPQLIPFGSGRRACPGISFALEVVPLTLANLIHGFEIGRPSKELLNMEENFGFISSRKVPLQVVLTPRLSAQDYK* 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5586023 5588716 - Chy4G072660.1 Chy04g00548 224447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00548 528 SUPERFAMILY Cytochrome P450 52 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 Pfam Cytochrome P450 47 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 460 469 IPR017972 GO:0005506|GO:0016705
Chy04g00548 528 PRINTS E-class P450 group I signature 314 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 PRINTS E-class P450 group I signature 99 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 PRINTS E-class P450 group I signature 418 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 PRINTS E-class P450 group I signature 457 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 PRINTS E-class P450 group I signature 467 490 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 PRINTS E-class P450 group I signature 202 220 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 PRINTS E-class P450 group I signature 334 360 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 PRINTS E-class P450 group I signature 75 94 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 PRINTS E-class P450 group I signature 377 395 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 PANTHER CYTOCHROME P450 82C3-RELATED 44 527 - -
Chy04g00548 528 PRINTS P450 superfamily signature 325 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 PRINTS P450 superfamily signature 458 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 PRINTS P450 superfamily signature 378 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 Gene3D Cytochrome P450 32 519 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00548 528 PANTHER CYTOCHROME P450 44 527 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00548 - - - csv:101212735 991.875
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00548 Chy-Chr4:5586023 Chy04g00552 Chy-Chr4:5660245 0 dispersed
Chy04g00547 Chy-Chr4:5543311 Chy04g00548 Chy-Chr4:5586023 0 tandem
Chy04g00548 Chy-Chr4:5586023 Chy04g00549 Chy-Chr4:5605933 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g858 . Blo12g00922 . Bda03g00241 . . Bma04g00191 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1876 . . . Lsi04g01627 Csa03g04169 Chy04g00548 . . . . . . . . . . . Cmo09g00178 . . . . . . Bhi09g02057 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00548 Chy_Chr04 FPKM 9.047619 7.24321 12.669038 11.448469 8.491102 6.952979 13.524316 6.464697 6.006411 8.402343