Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00549 ATGATCTCTATGTCTCTATTTATTCTCATATTCTTTCTCTATACTCTCTACTGGCTTTTAAATCTTTCATCATTATTCACTTCTCAACGTCGTAAAAACAACCTCCAGCCACTACCAATAGCCCGCGGCGCCTGGCCGGTGATCGGCCACCTTCATCTCCTAAGCTCGTCCGAACCAGGCCACAAAACCTTGGGCAAAATGGCAGATTCCAATGGACCAATTTTCACATTGAAATTGGGTATCCATAGAGCAATAGTCGTGAGCAATTGGGAAATTGCAAAAGAGTGTTTTACTACAAACGACAGAATATTTGCATCACGCCCTAAACTTACTGCCGCAAAGCTCCTAGGCTATAATAATTCAATGTTTGGGCTTGCCCAATACGGCCCTTTCTGGCGCCACATTCGCAAAGTAATCTCTCTTGAACTCCTCTCCACTCATCGTCTCCAACAATTTCAACCCATCAGAATATCTGAAATCCAGAGTTCCATCAACAAGCTATACCAGTTATGTACCAAAGAGAAACCGTTGGTGGAGATGAAGGCGTGGTTCGAGGACATAACACTCAATATCATGTTCAAAATCATCTTCGGGAAGCGATTCACCGACGATTTAAAAGGAGATCAAGATCATCGAAAGACGTTCAGGGACTTAATGGAGTTATTTGGAGTGTTTGTACCATCTGATTCGTTTCCGTTTTTGAGTTTGTTGGATTTGGGAGGGTATGAAAAGGCTATGAAGACGACATCAAAAGTCCTAGACGAGGTGTTTGATGAATGGCTTGAAGAACATCGTCAAAGGAAAATTGAGAACAATGATAATAGTGCAGAGGACTTCATGGATGTGATGCTTTCTATCGTTAAAGATGATGATGAACAACTTTCTGGCTATGTTGGCGATTCAGTCATAAAGGCTAATTGTTTGTTACGACTACAGATAGAATTACATGCTATGATATTGGCTGGATCTGATACTACTACAACAACAATGACATGGGCTCTTTCTTTACTTCTAAACAATCAAGAAACACTTAAAAAAGCTCAGATTGAGTTGGAAGAACAAGTTGGGAGACAAAAACAGGTGACAGAATCCGATGTCAAAAATTTAATATATCTCCAAGCTATTGTAAAGGAATCTTTACGTCTTTATCCTGCTGTACCACTCTCAATACCTCATGAATCTACGGAAGATTGTTCTATTTTTGGCTACCATATCCCCTCAAGAACACGCCTAATAGTGAATATTCAAAAGCTCCAAAGAGATCCTCTTGTTTGGGAGGAACCTAATGAATTTCGGCCAGAAAGATTTCTAACAACTCATAAAGACTTCGATGTTAGAGGTCAAAATCCTCAATTAATTCCATTTGGAAAGGGTCGAAGGATGTGTCCTGGTACATCTTTTGCCTTCCAAATTATTCATCTTACGCTTGCAAATCTACTTCATGGATTTGAAATTGATAGACCATCAAAGGATTTACTTGATATGGAAGAGAGTGTCGGACTGACCAGTACTAAGAAATCTCCACTCGAGGTTGCTTTAACTCCACGATTGCCTGCTCTAGGTTCCGATTGA 1572 40.2 MISMSLFILIFFLYTLYWLLNLSSLFTSQRRKNNLQPLPIARGAWPVIGHLHLLSSSEPGHKTLGKMADSNGPIFTLKLGIHRAIVVSNWEIAKECFTTNDRIFASRPKLTAAKLLGYNNSMFGLAQYGPFWRHIRKVISLELLSTHRLQQFQPIRISEIQSSINKLYQLCTKEKPLVEMKAWFEDITLNIMFKIIFGKRFTDDLKGDQDHRKTFRDLMELFGVFVPSDSFPFLSLLDLGGYEKAMKTTSKVLDEVFDEWLEEHRQRKIENNDNSAEDFMDVMLSIVKDDDEQLSGYVGDSVIKANCLLRLQIELHAMILAGSDTTTTTMTWALSLLLNNQETLKKAQIELEEQVGRQKQVTESDVKNLIYLQAIVKESLRLYPAVPLSIPHESTEDCSIFGYHIPSRTRLIVNIQKLQRDPLVWEEPNEFRPERFLTTHKDFDVRGQNPQLIPFGKGRRMCPGTSFAFQIIHLTLANLLHGFEIDRPSKDLLDMEESVGLTSTKKSPLEVALTPRLPALGSD* 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5605933 5607841 - Chy4G072670.1 Chy04g00549 224448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00549 523 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 PRINTS P450 superfamily signature 462 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 PANTHER CYTOCHROME P450 82C3-RELATED 38 519 - -
Chy04g00549 523 Gene3D Cytochrome P450 24 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Chy04g00549 523 Pfam Cytochrome P450 44 505 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 PRINTS E-class P450 group I signature 187 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 SUPERFAMILY Cytochrome P450 44 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00549 523 PANTHER CYTOCHROME P450 38 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00549 - - - csv:101207850 966.452
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00547 Chy-Chr4:5543311 Chy04g00549 Chy-Chr4:5605933 0 dispersed
Chy04g00549 Chy-Chr4:5605933 Chy04g00552 Chy-Chr4:5660245 0 dispersed
Chy04g00548 Chy-Chr4:5586023 Chy04g00549 Chy-Chr4:5605933 0 tandem
Chy04g00549 Chy-Chr4:5605933 Chy04g00550 Chy-Chr4:5634131 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g857 . Blo12g00923 Bda01g00555 Bda03g00240 Bpe02g00413 . . . . . . Cma09g00183 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01624 Csa03g04166 Chy04g00549 . . . . . . . . . . Cmo01g01943 Cmo09g00179 . . . Car09g00162 . . Bhi09g02056 . . . . . . . . . . . . . . . . Cme04g00637
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00549 Chy_Chr04 FPKM 9.529525 10.422963 16.478128 16.292994 20.474621 20.083258 20.772217 13.955986 14.360394 13.408707