Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00550 ATGGAACAGCCTTATACGATCGCCGGAATTATCCTCTCCCTTGTTTTCTTTCTCTACACTGTTTTCATTATGTCCCGGGGATCCGTCGCTCAACGGAAAACACTCCCACCAGAGGTTGATGGCGCTTGGCCGGTGATCGGCCACCTCCACCTTCTAAATGCAAGTGAGCCAACCCACATAACATTGGCAAAAATGGCGGATGCGTATGGACCAATATTCACGTTTAGATTCGGTAGAAAAAGAGCATTGATTGTGAGCAATTGGGAGATGGCAAAAGAGTGTTTTACTACAAACGATAAAATCTTTGCGTCTCGCCCAAAGTTGTTCGCATCAAAGCTTCTTGCCTATAACTATGCCATGATCGGATTCAGCGCATACAATCCACACTGGCGCTATGTCCGCAAAATAGTGACCGTTGGACTCCTCAGGAACCACCACATGGGCCGACTCCAAAACATAAGAGAATTAGAGGTTCGAAACTGGATGAAGGAACTCCACGACTTCTGTTGGCTTCAAAACAATAAAAGAACTGAGGAAGTTTTTGTGAACATGAAAAAATGGTTTGAAGACGTAATCTTCAATATCATATTCAAGATGGTGATTGGAAAGCGATTCACCACTGCTTTCGACGATCCTGTGTGCCGTGAAAAGTGCAGAAAGGCGTTGAATGGTTTCCTTGATTTCTTTGGAAGATTCATTCCTTCAGATTTGTTTCCGTTTTTGAGTTGGTTGGATTTAGGAGGACATGAGAAAGCCATGAAAAAGACTGCACAGATATTGGATGAGACGTTTAACAAATTCCTCCAACAACATCGAGAGGGAAGAGATTGCAATAAAGGGAAAATTGAAGAACAAACCTTCATGGATGCAGTGATTTCTACGGTTGAAAATGATGATGGAGAAAACTTAAGTTACAATGCTGATACAATTATCAAAGCTACTTGTTTGAATCTGATGGTAGGTGGAATTGACACTACGACCGTTACAATAACTTGGGCTCTTTCTTTACTTCTCAACAATGAAGAAACATTGAGGAAAGCTCAACTTGAACTAGACGAACAAATTGGGAGAGAAAGACAAGTGAATGAATCAGATATAAAAAAACTATTATATCTCAACGCTATTGTGAAGGAAACTCTACGATTACATCCACCTGGGCCACTTTTAGTCCCTCATGAATCTATAGAAGACTGTGCAATTGCTGGCTACCACATTCCAAAAGGGACTCGCCTAATTGTTAATGCTCAAAAGCTCCAAAAAGACCCACTTGTTTGGGGAGATCCATGTGAATTTCGACCAGAAAGATTTTTAACAAGCGAAAATAATGTGGATGTTAGAGGAAAAAGCCCCCAATTGATACCATTCGGTACTGGTCGAAGGATTTGCCCTGCCATTTCATTTGCTCTTCCAATGTTACATCTTACACTTGCAAACTTTCTACATGGGTTCAAAATTGAAAGGCCATCAAAAGCGCTTCTTGACATGGAAGAGAGCAGTGGATTGGCTAGTGGCAGAAAAGCTCCGCTCAAAGTTGTTTTAACTCCGCGCCTTCCCACCAAAGTGTACTAG 1569 41.75 MEQPYTIAGIILSLVFFLYTVFIMSRGSVAQRKTLPPEVDGAWPVIGHLHLLNASEPTHITLAKMADAYGPIFTFRFGRKRALIVSNWEMAKECFTTNDKIFASRPKLFASKLLAYNYAMIGFSAYNPHWRYVRKIVTVGLLRNHHMGRLQNIRELEVRNWMKELHDFCWLQNNKRTEEVFVNMKKWFEDVIFNIIFKMVIGKRFTTAFDDPVCREKCRKALNGFLDFFGRFIPSDLFPFLSWLDLGGHEKAMKKTAQILDETFNKFLQQHREGRDCNKGKIEEQTFMDAVISTVENDDGENLSYNADTIIKATCLNLMVGGIDTTTVTITWALSLLLNNEETLRKAQLELDEQIGRERQVNESDIKKLLYLNAIVKETLRLHPPGPLLVPHESIEDCAIAGYHIPKGTRLIVNAQKLQKDPLVWGDPCEFRPERFLTSENNVDVRGKSPQLIPFGTGRRICPAISFALPMLHLTLANFLHGFKIERPSKALLDMEESSGLASGRKAPLKVVLTPRLPTKVY* 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5634131 5637290 + Chy4G072680.1 Chy04g00550 224449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00550 522 PRINTS P450 superfamily signature 453 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00550 522 PRINTS P450 superfamily signature 321 338 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00550 522 PRINTS P450 superfamily signature 374 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00550 522 PANTHER CYTOCHROME P450 82C3-RELATED 35 522 - -
Chy04g00550 522 Pfam Cytochrome P450 41 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00550 522 PRINTS E-class P450 group I signature 462 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00550 522 PRINTS E-class P450 group I signature 330 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00550 522 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00550 522 PRINTS E-class P450 group I signature 310 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00550 522 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00550 522 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00550 522 PRINTS E-class P450 group I signature 452 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00550 522 PRINTS E-class P450 group I signature 373 391 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00550 522 PRINTS E-class P450 group I signature 414 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00550 522 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 455 464 IPR017972 GO:0005506|GO:0016705
Chy04g00550 522 PANTHER CYTOCHROME P450 35 522 - -
Chy04g00550 522 SUPERFAMILY Cytochrome P450 42 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00550 522 Gene3D Cytochrome P450 29 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00550 - - - csv:101208575 792.727
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00550 Chy-Chr4:5634131 Chy04g00555 Chy-Chr4:5698404 0 dispersed
Chy04g00549 Chy-Chr4:5605933 Chy04g00550 Chy-Chr4:5634131 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g854 . . Bda01g00557 . . . . . . . . Cma09g00185 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01620 Csa03g04164 Chy04g00550 . . . . . . . . . . Cmo01g01942 . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00651
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00550 Chy_Chr04 FPKM 30.564281 32.449577 8.734428 7.465407 6.060818 5.629193 6.439594 1.992441 2.090991 2.193752