Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00552 ATGGAACTTTCTCAACTCTCTTTATCAGCCACCGTCGTTACCGGAATCTTCTCCCTTCTCCTCTTTCTCTATGCCCTCTTCAACATATCTACGAGAGTGGTCGGTGCTCATCGAAACAAACTCCCACCCGAACCCCCTGGTCGTTGGCCAGTGATAGGTCACCTCCATTTGTTTAATGCAACAGAACCAGCGCACATAACCTTAGCAAAGTTGGCAGACACTTACGGACCAATATTTACTTTGAAATTGGGTATGAACAAAGCCGTGGTCGTGAGCAGTTGGGAAATAGCGAAAGAGTGTTTCACTACAAACGACAGAATCTTTGCCTCTCGTCCAAAGCTCGTGGCCTCCAAGTTGTTGGGATATAACTACACCATGTTAGGATTGAGCCCATATGGTTCGTACTGGCGTCATATCCGCAATCTCGCCACGCTAGAACTCTTGACCAACCGACGCCTCCACCAGCTCCAACATATCAGAGAATTTGAAGTCCAAACTTCAATTCATAAGCTGTATGAGTCATGTATCAGAAACAAGAAATCGTTGGTGGAAATGAATACGTGGTTTGGGGATATAACTCTAAACACAATCTTTAGGATAGTGGTTGGAAAGAGATTCTCAATGGCAATGGATGGAAGTGCTAATGGAAATGATGTATATCGTATGGCATTGAGGGATTTTTTTGAATGGTTTGGAGTGTTTGTGCCTTCAGATAGTTTTCCATTTCTAAAGTGGTTTGATTTGGGTGGACATGAGAAAGCCATGAAGAAGACAGCTAAAATTCTTGACGAGGTGTTTGATAAATGGCTTCAAGAACATCGACTAAGGAGAAAATTTGAGGAGAGTGAGAATGACTTCATGGATGTACTTCTTTCTAATGTTAAAGATGCAGAACAATTTTCAAACTACGATGCAGATACAGTTATCAAGTCTTCATGTTTGGCTCTTATATTGGCTGGTTTTGATACTACAACTGTAACAATGATTTGGACACTTTCTTTATTACTCAACAATCCAGAAGCACTCAAAAGAGCTCAACTTGAATTAGATGAGCAAATTGGGAGACACAAACAAGTTAAAGAATCAGATATAGAAAATCTTAAGTATCTCGAAGCAATAGTGAAGGAAGCATTACGTTTATATCCACCAGGACCACTTGGAGTTCCTCATGAATCTACAGAAAATTGTAAAATTGCAGGCTATCATATTCCAGCAGGAACACGTTTAATGGTGAATATTCAAAAGCTTCAAAGAGACCCACGTGTGTGGGAAGATCCCTGTGAATTTAGACCAGAAAGATTTCTAACAAGTCACAAAGATTTTGACGTTAGAGGAAAATGCCCCAAGCTCATACCATTTGGAACTGGACGTAGGATGTGTCCAGCAATTTCATTTGCACTTCAGATTATGCATTTAGCACTTGCAAATTTGCTTCATGGATTTGAAATTGAAAGGCCATCTCAAGACCTAATTGATATGGAAGAAAGTGCTGGTATGACTAGCATTAAAAAGGAGCCACTCCGAGTTATTATAAGCCCACGCCTCCAACCTCAACTTTATGGATGA 1566 40.61 MELSQLSLSATVVTGIFSLLLFLYALFNISTRVVGAHRNKLPPEPPGRWPVIGHLHLFNATEPAHITLAKLADTYGPIFTLKLGMNKAVVVSSWEIAKECFTTNDRIFASRPKLVASKLLGYNYTMLGLSPYGSYWRHIRNLATLELLTNRRLHQLQHIREFEVQTSIHKLYESCIRNKKSLVEMNTWFGDITLNTIFRIVVGKRFSMAMDGSANGNDVYRMALRDFFEWFGVFVPSDSFPFLKWFDLGGHEKAMKKTAKILDEVFDKWLQEHRLRRKFEESENDFMDVLLSNVKDAEQFSNYDADTVIKSSCLALILAGFDTTTVTMIWTLSLLLNNPEALKRAQLELDEQIGRHKQVKESDIENLKYLEAIVKEALRLYPPGPLGVPHESTENCKIAGYHIPAGTRLMVNIQKLQRDPRVWEDPCEFRPERFLTSHKDFDVRGKCPKLIPFGTGRRMCPAISFALQIMHLALANLLHGFEIERPSQDLIDMEESAGMTSIKKEPLRVIISPRLQPQLYG* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5660245 5662650 - Chy4G072700.1 Chy04g00552 224451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00552 521 Gene3D Cytochrome P450 30 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00552 521 PANTHER CYTOCHROME P450 82C3-RELATED 40 520 - -
Chy04g00552 521 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 453 462 IPR017972 GO:0005506|GO:0016705
Chy04g00552 521 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00552 521 PRINTS P450 superfamily signature 451 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00552 521 PRINTS P450 superfamily signature 319 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00552 521 PRINTS E-class P450 group I signature 308 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00552 521 PRINTS E-class P450 group I signature 450 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00552 521 PRINTS E-class P450 group I signature 192 210 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00552 521 PRINTS E-class P450 group I signature 72 91 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00552 521 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00552 521 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00552 521 PRINTS E-class P450 group I signature 96 117 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00552 521 PRINTS E-class P450 group I signature 371 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00552 521 PRINTS E-class P450 group I signature 460 483 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00552 521 PANTHER CYTOCHROME P450 40 520 - -
Chy04g00552 521 Pfam Cytochrome P450 43 507 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00552 521 Coils Coil 342 362 - -
Chy04g00552 521 SUPERFAMILY Cytochrome P450 42 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00552 - - - csv:105434433 1011.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00548 Chy-Chr4:5586023 Chy04g00552 Chy-Chr4:5660245 0 dispersed
Chy04g00549 Chy-Chr4:5605933 Chy04g00552 Chy-Chr4:5660245 0 dispersed
Chy04g00552 Chy-Chr4:5660245 Chy11g00648 Chy-Chr11:7794333 0 dispersed
Chy04g00562 Chy-Chr4:5910194 Chy04g00552 Chy-Chr4:5660245 5.96E-151 dispersed
Chy04g00552 Chy-Chr4:5660245 Chy04g00553 Chy-Chr4:5677724 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g852 . . . Bda03g00237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01618 Csa03g04163 Chy04g00552 . . . . . . . . . . . Cmo09g00180 . . . . . . Bhi09g02046 . . . . . . Cla05g01981 . . . . . . . . . Cme04g00654
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00552 Chy_Chr04 FPKM 3.52488 4.833112 5.737161 6.169571 11.474082 11.569648 10.966264 8.092033 8.006195 6.286882