Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00555 ATGGAAGAGCCGTCTCACGCCTTCGCCGGAGTAATCTTTGCCCTTGCCTTCATTATCTACCTCCTTTTCATCATGTCTAGGAGATCCGTAGCTCATCCGAAGAGACTCCCACCAGAAGCCGATGGCGCTTGGCCAGTGATCGGCCACCTCCATCTCCTAAATGCGAATGAGCCAATCCACATAACATTGGCCAAAATGGCGGATGCGTATGGACCAATATTCACGTTCAGATTCGGTACGAAAAGAGCGTTGATTGTGAGCAATTGGGAAATAGGAAAAGAATGCTTTACTACAAACGATAGAATCTTTGCGTCTCGTCCAAAGCAACTTGCATCAAAGCTTCTTGCCTATGACTATGCTATGATGGTGTTCAGCCCTTACAATTCACACTGGCGCTATGTACGCAAACTAGCCATGCTCGGACTCTTCACAAACCAACGCATCGAGCAGCTTGAACACGTTAGAGTAGTCGAAGTTCATAGTTGGATGAAGGAACTTTATGACTTATATTGGCTCAAAAAAAACAATAACAAAAGTGAGAAGGTTGTGGTGGAACTGAAGAAATGGTTTGTAGACATAACCCTCAACACCATGTTCAAGATGGTGATCGGAAAGCGATTTGTGACCGCCTTCGACGACCATGTAAGCCGTGAACAGAGGACACGAAAAAGCCATGAAGAAGACGCACAAATATTAGATGAGGTGTTTGACAAATTCCTCCAACAACATCGAGAGAGGAGAGATTATTACAGTAATGGACAGATGGAAGAAAAAGACTTCATGGATGTAATGATTTCTAGTGTTGAAGATGATGATGGAGAACAGCTCAACTACGATGCTGACACAATTATCAAAGCTACATGCTTGAATGTGATATTAGGTGGATTTGATACTACAACAGTTACAATGTCATGGGCTCTTTCTTTAATTCTCAACAATGAAAATGCATTAAAGAAGGCTCAACTTGAATTAAACGAACAAGTTGGGAGAGAAAGACAAGTGAAAGAGACAGATTTAAAAAATCTACCTTATCTCCAAGCTATTGTTAAGGAAACTCTACGATTACACCCACCTGGGCCACTCTTAGTCCCTCGTGAATCAACAGAAGATTGTAGAATTGGTAGCTACCACATTCCGAAAGGGACCCGCCTCATTGTCAATGCTCAAAAACTCCAAAAAGACCCACTTGTTTGGGATGATCCATGTGAATTTCGACCAGAAAGATTTATAACAAGCCAAAAGAATTTTGATGTTAGAGGACAAAATCCTCAATTGATACCATTTGGAAACGGTCGAAGGATGTGCCCTGCCATCTCGTTCGCCCTTCAAATGATACATCTTACGCTAGCCAACTTGCTACATGGGTTCAAAATTGATAGACCATCACAAGAACTTGTCGACATGGAAGAGAGTTGTGGATTGGCTAGTGGTAGAAAAGCTCCACTCGAAGTTGTTTTAACTCCACGACTACCCGCTTATGTTTATGAGTAG 1491 42.32 MEEPSHAFAGVIFALAFIIYLLFIMSRRSVAHPKRLPPEADGAWPVIGHLHLLNANEPIHITLAKMADAYGPIFTFRFGTKRALIVSNWEIGKECFTTNDRIFASRPKQLASKLLAYDYAMMVFSPYNSHWRYVRKLAMLGLFTNQRIEQLEHVRVVEVHSWMKELYDLYWLKKNNNKSEKVVVELKKWFVDITLNTMFKMVIGKRFVTAFDDHVSREQRTRKSHEEDAQILDEVFDKFLQQHRERRDYYSNGQMEEKDFMDVMISSVEDDDGEQLNYDADTIIKATCLNVILGGFDTTTVTMSWALSLILNNENALKKAQLELNEQVGRERQVKETDLKNLPYLQAIVKETLRLHPPGPLLVPRESTEDCRIGSYHIPKGTRLIVNAQKLQKDPLVWDDPCEFRPERFITSQKNFDVRGQNPQLIPFGNGRRMCPAISFALQMIHLTLANLLHGFKIDRPSQELVDMEESCGLASGRKAPLEVVLTPRLPAYVYE* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5698404 5704012 + Chy4G072730.1 Chy04g00555 224454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00555 496 PANTHER CYTOCHROME P450 82C3-RELATED 34 222 - -
Chy04g00555 496 PANTHER CYTOCHROME P450 82C3-RELATED 223 496 - -
Chy04g00555 496 SUPERFAMILY Cytochrome P450 43 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 PRINTS E-class P450 group I signature 283 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 PRINTS E-class P450 group I signature 303 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 PRINTS E-class P450 group I signature 425 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 PRINTS E-class P450 group I signature 387 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 PRINTS E-class P450 group I signature 435 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 PRINTS E-class P450 group I signature 346 364 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 Pfam Cytochrome P450 221 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 Pfam Cytochrome P450 38 215 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 428 437 IPR017972 GO:0005506|GO:0016705
Chy04g00555 496 PANTHER CYTOCHROME P450 34 222 - -
Chy04g00555 496 PRINTS P450 superfamily signature 347 358 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 PRINTS P450 superfamily signature 426 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 Gene3D Cytochrome P450 22 485 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00555 496 PANTHER CYTOCHROME P450 223 496 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00555 - - - csv:101208575 912.909
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00550 Chy-Chr4:5634131 Chy04g00555 Chy-Chr4:5698404 0 dispersed
Chy04g00555 Chy-Chr4:5698404 Chy11g00648 Chy-Chr11:7794333 0 dispersed
Chy04g00554 Chy-Chr4:5678881 Chy04g00555 Chy-Chr4:5698404 7.60E-67 tandem
Chy04g00555 Chy-Chr4:5698404 Chy04g00556 Chy-Chr4:5738350 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g850 . Blo12g00927 . Bda03g00236 . . Bma04g00188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01616 Csa03g04161 Chy04g00555 . . . . . . . . . . . Cmo09g00183 . . . . . . Bhi09g02035 . . . . . . Cla05g01983 . . . . . . . . . Cme04g00662
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00555 Chy_Chr04 FPKM 0.0 0.0 0.921715 0.384493 22.259232 21.311106 23.110134 0.530298 0.535206 0.599476