Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00558 ATGATGGAGTTCCCATCACCCATCATTATTTTTCTCTTCATTTTTTCTTCTTATTATTTGTCGAGAAAGTGGCAGAAAAATAAGAAAACTAAGGGAGTTAGTGAGGGAAAGAAGGCCCCTTCGCCGTGGGGAGCGTTACCGATAATTGGCCACCTCCATCTGCTGAACAAGCGCGGGAAGCTTCCACACCATGTTCTTGGAGCCATGGCTGATAAATATGGCCCCATCTTTAGGTTGAACCTCGGCTCGCGCCCGGCTTTGGTTGTTAGTAATTGGGAAATGGCTAAAGAAAGTATGTGTATTAATGACGCGGCCGCCGCCTCTCGACCAGAGCTCTCAGTGTCTAAGAGGTTCTCTTATAATTTTGCCATGTTTGGGTTGGCTTCTTACAGTTCTTACTGGCGTGATATGCGTAAAATTACCCACTTGGAGCTCCTCTCCAATCCACGAGTCGATCAGATGGTTAAGAGTGTGATGTTAGGTGAGATGAGCACATCATTGAGAGAGTTATACACAAGATGGGGTGGAGAAAGGAAGAAATTGGAGGAAATTTCAGTTGAAATTAAACATTGGTTTGGGGATGCAACACTGAATATGCTTCTCAAAATCATCATGGGGAAAAGATGTGTGGGTCCAAATGCTTCCAAGGGAAATGAAAATGATGCAAGAACATTGCAAATGGGAATTAGGGAGTCTTTCCATTTGATGGGTGAAGGGTTATTGAGAGACTATATTCCTTTGCTTGCAAAGCTTGGATTTGATGGCCGAGTTAAGGCTATGGAGAAAATAGCCAAACAAATGGATGCCATTATTCAACGTTGGTTTGAAGAACACATGCACGATAGATCCACTAATGATTTGGATAGAAAAGATGGTGATTTTATGGATTCATTGATTTCGTTAGGTCAAGCTAAACAACTTCCGAGTCACCACAATCAAAATACAATTGTCAAAGCCACAACTTTGAACATGATTGCTGGAGGAACTGAAAGCAGCACAGTGACTCTAACATGGGCCATAGCTTTATTACTAAACAACCCATGTGCCTTAGAAAAGGCTTATCAAGAGCTTGACCAAGTTGTAGGAAGAGATAGGAAGCTGAACGAGTCAGACATAAACAATCTTGTTTATATACAAGCCATTGTGAAAGAAACAATGAGATTGTACCCAGCAGGGCCTTTACTGGGCCCTCGTGAATTCTACAAGGACTGTTTTGTGGCTGGCTATTTTATCCCCAAGGGCACTCAATTGATCCCCAACATTTGGAAGATCCAAACTGACCCTCGGGTTTGGCCCGACCCTTTCGTGTTCAAGCCCGAGCGATTTTTGACAACACATAAGCACGTGGATTTGAAAGGGAATAATTTTGAGTTGATTCCGTTTGGGAGTGGAAGGAGAGGGTGTCCTGGAGTTTCATTTGGACTTCAAATGGTGCATTTTGCTTTGGCTGGGTTTTTGCATTCTTTCCACATTAAAAATCCATTGGGCGAAGAGATTGATATGAGGGAGGATTTTGGGATGGCCAATGAGAAAGTGGTTCCTCTTAATGTTTTGGTTACCCCTCGGTTACCTTTGCATCTTCACACCCCAATAACAGTGTAG 1602 42.95 MMEFPSPIIIFLFIFSSYYLSRKWQKNKKTKGVSEGKKAPSPWGALPIIGHLHLLNKRGKLPHHVLGAMADKYGPIFRLNLGSRPALVVSNWEMAKESMCINDAAAASRPELSVSKRFSYNFAMFGLASYSSYWRDMRKITHLELLSNPRVDQMVKSVMLGEMSTSLRELYTRWGGERKKLEEISVEIKHWFGDATLNMLLKIIMGKRCVGPNASKGNENDARTLQMGIRESFHLMGEGLLRDYIPLLAKLGFDGRVKAMEKIAKQMDAIIQRWFEEHMHDRSTNDLDRKDGDFMDSLISLGQAKQLPSHHNQNTIVKATTLNMIAGGTESSTVTLTWAIALLLNNPCALEKAYQELDQVVGRDRKLNESDINNLVYIQAIVKETMRLYPAGPLLGPREFYKDCFVAGYFIPKGTQLIPNIWKIQTDPRVWPDPFVFKPERFLTTHKHVDLKGNNFELIPFGSGRRGCPGVSFGLQMVHFALAGFLHSFHIKNPLGEEIDMREDFGMANEKVVPLNVLVTPRLPLHLHTPITV* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5786387 5792560 - Chy4G072760.1 Chy04g00558 224457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00558 533 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 SUPERFAMILY Cytochrome P450 40 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 PANTHER CYTOCHROME P450 82C3-RELATED 37 527 - -
Chy04g00558 533 Gene3D Cytochrome P450 29 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506|GO:0016705
Chy04g00558 533 Pfam Cytochrome P450 40 505 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 PRINTS E-class P450 group I signature 379 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 PRINTS E-class P450 group I signature 94 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 PRINTS E-class P450 group I signature 195 213 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00558 533 PANTHER CYTOCHROME P450 37 527 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00558 - - K23136 csv:101213214 1028.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00558 Chy-Chr4:5786387 Chy11g00648 Chy-Chr11:7794333 1.50E-149 dispersed
Chy07g00251 Chy-Chr7:1984094 Chy04g00558 Chy-Chr4:5786387 4.21E-34 dispersed
Chy04g00558 Chy-Chr4:5786387 Chy04g00559 Chy-Chr4:5822139 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g847 . Blo12g00929 . Bda03g00235 . Bpe04g00199 Bma04g00187 . . . . Cma09g00190 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01612 Csa03g04159 Chy04g00558 . . . . . . . . . . Cmo01g01939 Cmo09g00185 . . . . . . Bhi09g02032 . . . . . . Cla05g01986 . . . . . . . . . Cme04g00667
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00558 Chy_Chr04 FPKM 40.823868 45.20528 70.498619 74.066147 32.575153 29.312246 30.861385 94.007858 93.847397 92.761589