Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00559 ATGCTCGTCTTTTTGTTTTTCATTTCATGCTACTACCTGTGGCAGAAGTGGCAACAGTTCAAATCTACTGAACCGAAACAGGCTCCAGCACCGCCGGGAGCATGGCCGATTATCGGCCACCTCCATATGCTCCACAATGTGAAGCTCCCCCATCATGCTCTTGGAGCCATGGCCGATAAATATGGGCCCATCTTCCGACTGCAGCTCGGGTCACGGTCGGCTTTAGTGGTGAGCAGCTGGGAAATGGCCAAGGAAAGCATGTGTGTTAACGACGCTGCTGCCGCCTCCCGGCCTGGCGTCTCCGGTACCAAACATTTTTCCTATGACTTCGCAGCATTCGGATTGGCTCCTTACAGTCCTTACTGGAGGGAGATTCGTAAGGTTACTCACATGGAGCTCCTCTCTAATCCACGCGTTGATCAGTTTAAGAACACCATGTTTGGTGAGGTGAAGACATCATTAAGAGAGCTGCACGAAACATGGGCAGCACAGAAGGATGGATCGGGGCAGGTTGAAGTGGAGATGAAACGTTGGTTTGGGGATGTGATAGTGAATATGCTTCTGAAGATCATCATCGGAAAACGATGTGTCGGTCCAAATGCCGAGGGAGGTGAAAAACAAGCTAAAGATTTTCAGTTGGCAATTAGGGATTCATTCCATTTAATGGGTCAAGGGTTGTTGAGAGATTATATTCCTCTGATCGGCCGGCTCGGATTTAATGGACAAGTGAAGGTGATGGAGAACATAGCCACACGATTCGACATGGTTCTAAGGGAATGGCTGGATGAACACAAGCTTAAAAGAACTTCTTCATGTTGTGGTAGAAAAGATGGAGATTTTATGGATGCTCTTGTTTCTCTATATGATGGCAAAGTGATTGAAGGTTACTATGATGGTGATACCATCATCAAAGCCACAACCCTCAATATGGTAGCCGGTGGAACTGAAAGCACTACAGTAACTCTAACATGGGCGATGTCATTGTTACTAAATAACCCACACGTCCTCGAAAGGGCACAGCAAGAGCTCGACACGGTGGTTGGCCGAGACAGACAACTGAAGGAGTCGGACATACCAAATCTTGTTTATTTAAAGTCCATAATCAAAGAGACTATGCGAATGTATCCAGCAGGGCCTTTATTAGGACCACGTGAGTTCTACAAGGAGTGCATTGTAGCTGGCTACTTTGTCCCCAAAGGCACCCAATTGATCCCAAACATTTGGAAGATCCAAACAGATCCACGTGTATGGCCCGACCCGTTTGAGTTCAAGCCAGAGCGGTTCTTGACAACCCATAAGAATGTGGATTTGAAAGGGAGTAATTTTGAGTTGATTCCGTTCGGGAGTGGAAGGAGAGGTTGCCCTGGACTTGCGTTTGGACTTCAAATGGTGCATCTTGCTTTGGCTGGGTTCTTACATTCCTTTGATGTCAAAAACCCGACCAAAGAACCTATTGATATGTCGGAGAATTTCGGAATGGCTAATGAGAAAGTTGTTCCTCTGAATGTTTTGGTCACTTCACGGTTACCTTCTCATCTTTACACAATAAATTAA 1554 46.33 MLVFLFFISCYYLWQKWQQFKSTEPKQAPAPPGAWPIIGHLHMLHNVKLPHHALGAMADKYGPIFRLQLGSRSALVVSSWEMAKESMCVNDAAAASRPGVSGTKHFSYDFAAFGLAPYSPYWREIRKVTHMELLSNPRVDQFKNTMFGEVKTSLRELHETWAAQKDGSGQVEVEMKRWFGDVIVNMLLKIIIGKRCVGPNAEGGEKQAKDFQLAIRDSFHLMGQGLLRDYIPLIGRLGFNGQVKVMENIATRFDMVLREWLDEHKLKRTSSCCGRKDGDFMDALVSLYDGKVIEGYYDGDTIIKATTLNMVAGGTESTTVTLTWAMSLLLNNPHVLERAQQELDTVVGRDRQLKESDIPNLVYLKSIIKETMRMYPAGPLLGPREFYKECIVAGYFVPKGTQLIPNIWKIQTDPRVWPDPFEFKPERFLTTHKNVDLKGSNFELIPFGSGRRGCPGLAFGLQMVHLALAGFLHSFDVKNPTKEPIDMSENFGMANEKVVPLNVLVTSRLPSHLYTIN* 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5822139 5825273 - Chy4G072770.1 Chy04g00559 224458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00559 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 447 456 IPR017972 GO:0005506|GO:0016705
Chy04g00559 517 Gene3D Cytochrome P450 18 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00559 517 PANTHER CYTOCHROME P450 82C3-RELATED 5 514 - -
Chy04g00559 517 PANTHER CYTOCHROME P450 82A2 5 514 - -
Chy04g00559 517 Pfam Cytochrome P450 29 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00559 517 PRINTS E-class P450 group I signature 302 319 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00559 517 PRINTS E-class P450 group I signature 454 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00559 517 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00559 517 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00559 517 PRINTS E-class P450 group I signature 322 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00559 517 PRINTS E-class P450 group I signature 444 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00559 517 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00559 517 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00559 517 SUPERFAMILY Cytochrome P450 29 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00559 517 PRINTS P450 superfamily signature 313 330 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00559 517 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00559 517 PRINTS P450 superfamily signature 445 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00559 - - - csv:101213457 1044.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00559 Chy-Chr4:5822139 Chy11g00648 Chy-Chr11:7794333 1.86E-156 dispersed
Chy04g00558 Chy-Chr4:5786387 Chy04g00559 Chy-Chr4:5822139 0 tandem
Chy04g00559 Chy-Chr4:5822139 Chy04g00560 Chy-Chr4:5877580 2.68E-143 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g845 . Blo12g00930 . . . . . . . . Cma01g01880 Cma09g00191 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04158 Chy04g00559 . . . . . . . . . . . Cmo09g00186 . . . . . . Bhi09g02031 . . . . . . Cla05g01987 . . . . . . . . . Cme04g00668
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00559 Chy_Chr04 FPKM 7.39823 8.514685 13.135118 12.904696 8.946237 7.183928 7.341445 35.855663 40.098076 38.091843