Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00560 ATGGCAGATCACATAATTTCTCCATATGGTATCAACATCTCCATAGTTGGATTACTCTTCCTCTTCCCTATTCTCATCTTCTCATATTATATTATTCTAATTCTCAAGAACAAAGCTACAACATTACCTCATAAACTCCGATCCCAACCCCCTGAAGTAGCCGGCGGATGGCCGATCATTGGCCATCTACTCCTCCTCAGAACTCACTCTCTGCTCCCCCACGAAACCTTTGGAGCATTGGCCGACAAATATGGCCCGATATTCCTAATCCGACTCGGCGTCCATCCAACTCTGGTCATAAACAATTGGGAAATCGCCAAAGAATGCTACACAACTCGTGATTCAATCGTCTCATCCCGACCCAAGACTTCAATTCAAAAGGAATTAAGCTACAACTTCGCCGGGTTTGGGTTCAGGCCAAAGTACGATGCTTTTTACCGAATCATGCGTAAAATGGCAGTCTCCAAAGTGCTTTCGAATAGCCGTCTGGAAATACAGAGAGATATGAGAGTTTATGAGGTGAACAGAGGAGTGAAGGAGATATACAACTCATGGACAGAGTACAGAAATGAGGATTTAATTGCTGTTGATTTGGATGAATGGATTGGGAATATTAATTTGAATGTGATTTTGAGGATGGTTTGTGGAAAGCGAATGGCTGAGGGGTCGGAGATGGAACGATGTCGGAAAGCGATGAGGGTTTTTTTTGAATTGGCAGGTCAGGTAACGGTGGGAGATGCGATTCCTTTTCTAAAATTTTTGGATTTAGGTGGTTATTTGAAGACGACTAAGGAAGTTTGTAAAGAATTGGATTGTATCATGAAGGAATGGCTTGAAGATCATCGTCAGAAGAAGAGAGACGCCGGCGCCAGTGCTGGTGCCGCGGAGAAGGGTCTTATGGGTGTGATGCCTTTGCTTCTTAAAGGGATGGAGCTTGATGGGTATGATGCTGATACTGTCATTAAAGCCACTTGCCTGACACTTATTTCTGGAGGAACCGATACAATGACAGTAACTATAACATGGGCAATCTCATTGTTACTTAACAACCAAGATGCATTAAGAAGAGTACAAGAGGAGTTAGACATCCATGTTGGAAACAAAAGACTAGTGAATGAATCAGACATAAACAAGCTAGTATATCTTCAAGCTGTAATCAAAGAGACATTAAGGTTGTACCCAGCAGGGCCATTGTCTGGGGCTCGAGAGGTAAGCCAGGATTGCACAATTGGAGGCTACAATGTCGCTTCAGGCACACACCTTATCACAAACATTTGGAAGATTCAGAGGGACCCTCGAGTTTGGACAGAGCCTTCAAAGTTCAAACCGGAGAGGTTTCTTAGTTGCCATAACTCTGACTACATGGATGTGAAGGGCCAACATTTTGAATTGTCTCCATTTGGTTATGGAAGAAGGGTCTGCCCAGGGTTAGGCATTAGCCTTATGATTGCGCCATTGGTGTTGGCTAGTTTGATTCATTCGTTTGATGTTACAACTTATGATGATGAACCAGTGGACATGGCTGCAAACCTTGGGCTCACCATGCGCAGAGTCAAACCTCTTCATGTTCTCGTTAAGCCGCGTCTCCTAGCTACTGCTTATGCATAA 1608 43.78 MADHIISPYGINISIVGLLFLFPILIFSYYIILILKNKATTLPHKLRSQPPEVAGGWPIIGHLLLLRTHSLLPHETFGALADKYGPIFLIRLGVHPTLVINNWEIAKECYTTRDSIVSSRPKTSIQKELSYNFAGFGFRPKYDAFYRIMRKMAVSKVLSNSRLEIQRDMRVYEVNRGVKEIYNSWTEYRNEDLIAVDLDEWIGNINLNVILRMVCGKRMAEGSEMERCRKAMRVFFELAGQVTVGDAIPFLKFLDLGGYLKTTKEVCKELDCIMKEWLEDHRQKKRDAGASAGAAEKGLMGVMPLLLKGMELDGYDADTVIKATCLTLISGGTDTMTVTITWAISLLLNNQDALRRVQEELDIHVGNKRLVNESDINKLVYLQAVIKETLRLYPAGPLSGAREVSQDCTIGGYNVASGTHLITNIWKIQRDPRVWTEPSKFKPERFLSCHNSDYMDVKGQHFELSPFGYGRRVCPGLGISLMIAPLVLASLIHSFDVTTYDDEPVDMAANLGLTMRRVKPLHVLVKPRLLATAYA* 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5877580 5879758 - Chy4G072780.1 Chy04g00560 224459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00560 535 Pfam Cytochrome P450 54 516 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 PRINTS E-class P450 group I signature 340 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 PRINTS E-class P450 group I signature 464 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 PRINTS E-class P450 group I signature 383 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 PRINTS E-class P450 group I signature 424 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 PRINTS E-class P450 group I signature 205 223 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 PRINTS E-class P450 group I signature 105 126 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 PRINTS E-class P450 group I signature 81 100 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 PRINTS E-class P450 group I signature 320 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 PRINTS E-class P450 group I signature 474 497 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 PANTHER CYTOCHROME P450 FAMILY PROTEIN 22 534 - -
Chy04g00560 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 467 476 IPR017972 GO:0005506|GO:0016705
Chy04g00560 535 Gene3D Cytochrome P450 36 530 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 SUPERFAMILY Cytochrome P450 55 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 PRINTS P450 superfamily signature 331 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 PRINTS P450 superfamily signature 465 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00560 535 PANTHER CYTOCHROME P450 82C3-RELATED 22 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00560 - - - csv:101213692 1026.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00560 Chy-Chr4:5877580 Chy04g00556 Chy-Chr4:5738350 9.22E-143 dispersed
Chy04g00560 Chy-Chr4:5877580 Chy04g00562 Chy-Chr4:5910194 0 proximal
Chy04g00559 Chy-Chr4:5822139 Chy04g00560 Chy-Chr4:5877580 2.68E-143 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g843 . . . Bda03g00233 . Bpe04g00198 Bma04g00186 . . . . Cma09g00192 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01609 Csa03g04156 Chy04g00560 . . . . . . . . . . Cmo01g01938 Cmo09g00188 . . . . . . Bhi09g02030 . . . . . . Cla05g01988 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00560 Chy_Chr04 FPKM 34.120766 36.520302 20.283003 19.478916 21.214899 19.598284 22.290031 16.306101 15.999089 15.29111