Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00562 ATGGAACATCCCGAAATACCATCCATTGGAATCATTTCGTTATATCTCTACAGCTTTGGAGCTGGTTTCTTCCTTTTGGTTCTCTCGTTTCTTTTTGTTTTGAAGAAGGCTACTGCCCGTAAACTCAAAGAACCTCCTGAAGTAGCCGGCGGATGGCCGATAATCGGTCATCTACAACTTCTCAAAAGTGATTCACAACTCCCTCATCAAACCTTGGGAGGCTTGGCTGATAAATATGGACCAATATTCCGCATCCGAGTCGGTGCTCAACCAATTCTTATTATTAGCAGTTCAGAATTAGCTAAAGAGTGTCACACAACCCTTGATTCAATTGTCTCCTCTCACCCCAAAAGTGTGGCAGGAAAGCTGTTAGGCTATAACTATGCGGCACTTGGGACCAGGCCTTATGATTCTTTTTATCGTCGTATGCGTAAAATTGTAGTTTCCGAGGTGCTTTCCAACCGCCGTCTAGAGTTACAAAGAGATGTTAGAGTTTCTGAGGTGAAGAAGGCTTTGAAGGAGGTTTTCAACCAATGGACAAAGAGAGAGGAAGGGTCAAACCATATATTGGTTAATGTGGAAGAGTTGATTGGGAATATTAACTTGAAAGTGGTTCTGATGATGGTTTGTGGTAAACGGTTCCTTGGTGGTTCTGGTGAGGTTGAGGAGATGAAACGGTATCGTAAAGTGATGAGAGATTTCTTGGATTTGTTGGGGACGTTTGTGGTGGGAGATTCCATCCCTTTTCTGAGATGGTTGGATGTTGGTGGATATGAGAAGGCCATGAAGATAACTTCAAAAGAATTGGACTCTCTTTTGGAGGAATGGCTTGAAGATCATCGTCGGAAGAGAAACTCAGGTGCCATCGATGGTGAACATGGCGACTTGATGGATGTATTGCTTTCCAATCTTGAAGGGATGGATCTTGGGGGCTACGACGCCGATACAGTCAACAAAGCCACTTGTACGAGCATAATAACTGGGGGAACTGACACTGTAACAATAAGTCTGGCATGGGCCGTCTCCTTATTGCTTAATAATAGGGAGGTACTAAGAAGGGCACAAGAGGAGCTAGACATTCATGTAGGAAACAAAAGGCTAGTGGACGAATTAGACATAAGCAAGTTGGTGTATCTCCAAGCTGTAGTGAATGAGACATTAAGGTTGTACCCTCCTGGACCGTTGTCGGGTGTTCGAGTGTTCAGTGAGGATTGCATAGTCGGAGGCTACAACATCGCGGGCGGCACACACCTCATTACAAACCTCTGGAAGATACATACAAACCCCGAGGTTTGGGCTGAACCTTTGGAGTTCAAGCCTGAGAGGTTTCTCAATAGAAACAAGCAGCTGGATGTGAAGGGGCAAAGATTTGAATTTCTCCCGTTTGGTTGTGGAAGAAGATCTTGCCCTGGAACGAACCTTGGGATTCAAATGACACAGTTGATGCTGGCAAGTCTGATTCATTCGTTCGAACTTAACACTCGTTCTGATGAACCAGTGGACATGGCTGCTAGCTTTGGAATTGCAATGTACAGAACCAACCCTCTTGAAGTTCTCGTCAAACCACGCCTTCTTGCTAGTGCTTATGTATGA 1593 44.7 MEHPEIPSIGIISLYLYSFGAGFFLLVLSFLFVLKKATARKLKEPPEVAGGWPIIGHLQLLKSDSQLPHQTLGGLADKYGPIFRIRVGAQPILIISSSELAKECHTTLDSIVSSHPKSVAGKLLGYNYAALGTRPYDSFYRRMRKIVVSEVLSNRRLELQRDVRVSEVKKALKEVFNQWTKREEGSNHILVNVEELIGNINLKVVLMMVCGKRFLGGSGEVEEMKRYRKVMRDFLDLLGTFVVGDSIPFLRWLDVGGYEKAMKITSKELDSLLEEWLEDHRRKRNSGAIDGEHGDLMDVLLSNLEGMDLGGYDADTVNKATCTSIITGGTDTVTISLAWAVSLLLNNREVLRRAQEELDIHVGNKRLVDELDISKLVYLQAVVNETLRLYPPGPLSGVRVFSEDCIVGGYNIAGGTHLITNLWKIHTNPEVWAEPLEFKPERFLNRNKQLDVKGQRFEFLPFGCGRRSCPGTNLGIQMTQLMLASLIHSFELNTRSDEPVDMAASFGIAMYRTNPLEVLVKPRLLASAYV* 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5910194 5911928 - Chy4G072800.1 Chy04g00562 224461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00562 530 PRINTS E-class P450 group I signature 76 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00562 530 PRINTS E-class P450 group I signature 317 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00562 530 PRINTS E-class P450 group I signature 469 492 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00562 530 PRINTS E-class P450 group I signature 380 398 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00562 530 PRINTS E-class P450 group I signature 421 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00562 530 PRINTS E-class P450 group I signature 337 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00562 530 PRINTS E-class P450 group I signature 459 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00562 530 PANTHER CYTOCHROME P450 FAMILY PROTEIN 24 529 - -
Chy04g00562 530 Pfam Cytochrome P450 49 505 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00562 530 PRINTS P450 superfamily signature 381 392 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00562 530 PRINTS P450 superfamily signature 328 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00562 530 PRINTS P450 superfamily signature 460 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00562 530 SUPERFAMILY Cytochrome P450 50 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00562 530 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 462 471 IPR017972 GO:0005506|GO:0016705
Chy04g00562 530 Gene3D Cytochrome P450 30 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Chy04g00562 530 PANTHER CYTOCHROME P450 82C3-RELATED 24 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00562 - - - csv:101208814 1003.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00562 Chy-Chr4:5910194 Chy04g00552 Chy-Chr4:5660245 5.96E-151 dispersed
Chy04g00560 Chy-Chr4:5877580 Chy04g00562 Chy-Chr4:5910194 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g842 . Blo12g00935 . . . . . . . . Cma01g01879 Cma09g00193 . . . . . . . . . . . . . . . . . . . . Cone7ag1411 . . . . Chy04g00562 . . . . . . . . . . . Cmo09g00189 . . . . . . . . . . . . . Cla05g01989 . . . . . . . . . Cme04g00671
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00562 Chy_Chr04 FPKM 7.703184 7.716033 26.414762 26.088272 5.915548 5.35684 4.948285 20.202259 19.078094 17.62529