Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00564 ATGTCCTCCGAAGACATCAATGGTCTCGACTCCCACCTCGTCTTCCAGAACGAATCCCTCCCTTTCAATTGCTCCTCCACCCCCCACCGACGCCTCCCCGACCCACCTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGACAAGCTCTTCCCTATTGTCGACCGTGACCGATTCTTTTCCCAACAGGGAGAGGATTTTCGCCGGAATGTTTTCGGTCACAACCGGAATTGGAATGGGACAGCGAGAACTGGAAGTGGTAAAGGATCGGATGAGGAAGATGATGATGATGACGACGACGATGAAGATGAAGTCGATGATGGCGATGATGATGTTGAAGGGCTTGTTTCTTTGGATGATGTTAATAAGTGTAGTAAAACTGCTAACCCCATTGACAGTAACAATGATAGAAGTGATCAGAGTAGTGAGGGGTTGAAGAATGGGATAAACAAATTGGGAAATGGGAAGCTTAAGCAGCATTCTTCATTTTGTGGCACTTTGTTAGTCAAGGATTCTTTTGTTGGGTCTTCCGGAGCAACTCAAAGTGAAAACAATCCGCAGGGAAGGTTGGGGAACTATCCAAATGCTGTTACAGTTGCAGAGCCTGATAGTGAAGCTTATTATTCTCAGTACTTGCAAAGCAATGAAGGGTCTGCTTCTGGGCAGAAAAATTTGAGTGTGGAAAATGGATGTGGTTTCGGGAGAAGGGATGTTTCGTTCTCAGGAGAGCCTGGAGAGTCTTTGAGATCAATTCTCACTGACCCTGTGACGGGCGCGCTCATGAAGGATGCAATGATATTGCCGTGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAAAGTAAGATCTTGTTACTCGTGCTCTCAGTCAGTTTCTGAAGACTCTATTGCCCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCTGCCGCGAAGAAGAATTATTATTTCACCGCTCACCGAAAAGGAGAAGAGAGAGGTTTGAGCAGGACAAGGGTGGTTATGGTGATTTGACTCTCATGGATACTCAAAGAGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACAGATAGGGTAATTATTAAAGGGAACAAGAGGACACCGCAACGTTTCGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACGCTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGCTCGCTTGCAAAGGTTCCAAATGATGCAACAACAAAGACGATAACAAGGAAGATCACGTCAAATTGGCTTTAG 1290 46.12 MSSEDINGLDSHLVFQNESLPFNCSSTPHRRLPDPPPKTRELCGFMDDKLFPIVDRDRFFSQQGEDFRRNVFGHNRNWNGTARTGSGKGSDEEDDDDDDDDEDEVDDGDDDVEGLVSLDDVNKCSKTANPIDSNNDRSDQSSEGLKNGINKLGNGKLKQHSSFCGTLLVKDSFVGSSGATQSENNPQGRLGNYPNAVTVAEPDSEAYYSQYLQSNEGSASGQKNLSVENGCGFGRRDVSFSGEPGESLRSILTDPVTGALMKDAMILPCGHSFGSGGIQHVLKVRSCYSCSQSVSEDSIAQNLSLQAAVQAFCREEELLFHRSPKRRRERFEQDKGGYGDLTLMDTQRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDATTKTITRKITSNWL* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5935497 5939887 + Chy4G072820.1 Chy04g00564 224463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00564 429 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 43 429 - -
Chy04g00564 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 318 IPR013083 -
Chy04g00564 429 MobiDBLite consensus disorder prediction 19 39 - -
Chy04g00564 429 MobiDBLite consensus disorder prediction 91 115 - -
Chy04g00564 429 MobiDBLite consensus disorder prediction 71 151 - -
Chy04g00564 429 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 43 429 - -
Chy04g00564 429 SUPERFAMILY RING/U-box 246 318 - -
Chy04g00564 429 ProSiteProfiles U-box domain profile. 247 319 IPR003613 GO:0004842|GO:0016567
Chy04g00564 429 MobiDBLite consensus disorder prediction 122 151 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00564 Chy-Chr4:5935497 Chy10g00311 Chy-Chr10:7777039 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00564 - - csv:101213937 806.208