Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00564 ATGTCCTCCGAAGACATCAATGGTCTCGACTCCCACCTCGTCTTCCAGAACGAATCCCTCCCTTTCAATTGCTCCTCCACCCCCCACCGACGCCTCCCCGACCCACCTCCCAAAACCCGCGAACTCTGCGGTTTCATGGACGACAAGCTCTTCCCTATTGTCGACCGTGACCGATTCTTTTCCCAACAGGGAGAGGATTTTCGCCGGAATGTTTTCGGTCACAACCGGAATTGGAATGGGACAGCGAGAACTGGAAGTGGTAAAGGATCGGATGAGGAAGATGATGATGATGACGACGACGATGAAGATGAAGTCGATGATGGCGATGATGATGTTGAAGGGCTTGTTTCTTTGGATGATGTTAATAAGTGTAGTAAAACTGCTAACCCCATTGACAGTAACAATGATAGAAGTGATCAGAGTAGTGAGGGGTTGAAGAATGGGATAAACAAATTGGGAAATGGGAAGCTTAAGCAGCATTCTTCATTTTGTGGCACTTTGTTAGTCAAGGATTCTTTTGTTGGGTCTTCCGGAGCAACTCAAAGTGAAAACAATCCGCAGGGAAGGTTGGGGAACTATCCAAATGCTGTTACAGTTGCAGAGCCTGATAGTGAAGCTTATTATTCTCAGTACTTGCAAAGCAATGAAGGGTCTGCTTCTGGGCAGAAAAATTTGAGTGTGGAAAATGGATGTGGTTTCGGGAGAAGGGATGTTTCGTTCTCAGGAGAGCCTGGAGAGTCTTTGAGATCAATTCTCACTGACCCTGTGACGGGCGCGCTCATGAAGGATGCAATGATATTGCCGTGTGGGCATTCCTTTGGGAGTGGTGGAATACAACATGTTCTTAAAGTAAGATCTTGTTACTCGTGCTCTCAGTCAGTTTCTGAAGACTCTATTGCCCAAAACTTATCTCTTCAAGCTGCAGTCCAAGCATTCTGCCGCGAAGAAGAATTATTATTTCACCGCTCACCGAAAAGGAGAAGAGAGAGGTTTGAGCAGGACAAGGGTGGTTATGGTGATTTGACTCTCATGGATACTCAAAGAGGTCGAGGTGTTCAGTTTCCTTTTGCAGTGACAGATAGGGTAATTATTAAAGGGAACAAGAGGACACCGCAACGTTTCGTGGGACGTGAGGCTGTTGTTACAACACAGTGCTTGAATGGATGGTATGTGGTGAAAACGCTAGACAATGCAGAGAGTGTAAAGTTGCAGTACCGCTCGCTTGCAAAGGTTCCAAATGATGCAACAACAAAGACGATAACAAGGAAGATCACGTCAAATTGGCTTTAG 1290 46.12 MSSEDINGLDSHLVFQNESLPFNCSSTPHRRLPDPPPKTRELCGFMDDKLFPIVDRDRFFSQQGEDFRRNVFGHNRNWNGTARTGSGKGSDEEDDDDDDDDEDEVDDGDDDVEGLVSLDDVNKCSKTANPIDSNNDRSDQSSEGLKNGINKLGNGKLKQHSSFCGTLLVKDSFVGSSGATQSENNPQGRLGNYPNAVTVAEPDSEAYYSQYLQSNEGSASGQKNLSVENGCGFGRRDVSFSGEPGESLRSILTDPVTGALMKDAMILPCGHSFGSGGIQHVLKVRSCYSCSQSVSEDSIAQNLSLQAAVQAFCREEELLFHRSPKRRRERFEQDKGGYGDLTLMDTQRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPNDATTKTITRKITSNWL* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5935497 5939887 + Chy4G072820.1 Chy04g00564 224463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00564 429 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 43 429 - -
Chy04g00564 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 318 IPR013083 -
Chy04g00564 429 MobiDBLite consensus disorder prediction 19 39 - -
Chy04g00564 429 MobiDBLite consensus disorder prediction 91 115 - -
Chy04g00564 429 MobiDBLite consensus disorder prediction 71 151 - -
Chy04g00564 429 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 43 429 - -
Chy04g00564 429 SUPERFAMILY RING/U-box 246 318 - -
Chy04g00564 429 ProSiteProfiles U-box domain profile. 247 319 IPR003613 GO:0004842|GO:0016567
Chy04g00564 429 MobiDBLite consensus disorder prediction 122 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00564 - - - csv:101213937 806.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00564 Chy-Chr4:5935497 Chy10g00311 Chy-Chr10:7777039 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g01451 . 2 721 Plant U-box Gene Family AT5G57035 52.4 4.1e-220 761.5
Chy04g00564 . 196 430 Plant U-box Gene Family AT5G05230 59.2 1.9e-71 266.5
Chy10g00311 . 141 375 Plant U-box Gene Family AT5G05230 59.2 3.0e-69 259.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00564 Chy_Chr04 FPKM 1.868243 2.108563 2.587796 3.048405 105.802444 104.5625 101.786491 0.500254 0.108563 0.164891