Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00565 ATGAACACACCATCTTCCTTCCCGGACCTCTCCTTGCAGATCAGCCTTCCGATGTCAACACTGCCATGTGAGGCCAAGGCCATGAAGCCACGAAGCTCAACCACCATGGATTCGAGTTCCAGTGGCAAAAGTGATTTGAGCCATGAAAGTGGTCTCTTCCACCTAGGGTTTGAAGCGGGAGATTTGGATGTTCCTCCTCGTCGTCCTCACCAAGCAGCTTGTTGTAATGTGCGTGACCACCGCGATTTCAAACGAAGCGGAGGCAGGGTCGGGTGTGGAGTAAGAAGAAATATCCGAGCTCCAAGAATGAGATGGACTACAACTCTTCATGCTCATTTTGTACATGCCGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTTAAGGACCTAACCCTAGCTCACGTCAAAAGCCATTTGCAGATGTACAGAACAGTGAAAAATACTGTGAAGGAAACAGCAGATGTTTGTGGAAGGCCTGAGGTTGAAGAAGATGGGATGGTTTTATCTTCTTGTGTTAAAAAATCTAACTTTGGATCAAATCATTTCCAGAGAATCCAAAGAAGTAGTTTGGTAACATCAATGCACAACAGTTGCCACAGAACCAAGTCAAACGCCGACCCTTTCGCTAAATCTAGAGGAATTAAGGTACTACGAGGCACTAAGACCCAAACGCTACCACCTCTAGCTCAATTGTTTCCAACTAACCTTGTTGTCCCTCCCCAAACTAGCTGCAAGCCGCTCCTCCATTCAAAGCCGAGTCGCATCAGATTCGATCCCAACTCAAACGTTTCCTTTGTCCAACCAAGCCTTGAGCTGACAGGAGTTGTTCCCAGCCAAATTTCGCGTCGCCCTCTGTTCTTCCCCGTGTTGTCTGAGCCGCCACGCTCTGGTCCTGTCCGTCGGTCTGCTTACTAG 945 47.94 MNTPSSFPDLSLQISLPMSTLPCEAKAMKPRSSTTMDSSSSGKSDLSHESGLFHLGFEAGDLDVPPRRPHQAACCNVRDHRDFKRSGGRVGCGVRRNIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKETADVCGRPEVEEDGMVLSSCVKKSNFGSNHFQRIQRSSLVTSMHNSCHRTKSNADPFAKSRGIKVLRGTKTQTLPPLAQLFPTNLVVPPQTSCKPLLHSKPSRIRFDPNSNVSFVQPSLELTGVVPSQISRRPLFFPVLSEPPRSGPVRRSAY* 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5954219 5960518 - Chy4G072830.1 Chy04g00565 224464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00565 314 Gene3D - 100 157 - -
Chy04g00565 314 MobiDBLite consensus disorder prediction 26 47 - -
Chy04g00565 314 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 213 IPR044847 GO:0000976|GO:0006355|GO:0010158
Chy04g00565 314 SUPERFAMILY Homeodomain-like 98 155 IPR009057 -
Chy04g00565 314 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 101 154 IPR006447 GO:0003677
Chy04g00565 314 MobiDBLite consensus disorder prediction 31 47 - -
Chy04g00565 314 Pfam Myb-like DNA-binding domain 102 153 IPR001005 -
Chy04g00565 314 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 5 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00565 - - - csv:101214179 427.557
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy03g01499 Chy04g00565 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00122 Chy-Chr4:1103395 Chy04g00565 Chy-Chr4:5954219 4.08E-33 dispersed
Chy04g00565 Chy-Chr4:5954219 Chy12g01377 Chy-Chr12:17968047 6.23E-35 dispersed
Chy07g00545 Chy-Chr7:4585329 Chy04g00565 Chy-Chr4:5954219 5.48E-20 transposed
Chy11g00943 Chy-Chr11:13051328 Chy04g00565 Chy-Chr4:5954219 1.51E-23 transposed
Chy03g01499 Chy-Chr3:17359749 Chy04g00565 Chy-Chr4:5954219 2.65E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g00365 . 12 316 G2-like Transcription Factor Family AT3G24120 59.2 1.5e-82 303.1
Chy11g01047 . 22 167 G2-like Transcription Factor Family AT3G24120 64.2 5.2e-43 171.8
Chy01g00844 . 7 157 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Chy04g00796 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Chy02g00490 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Chy06g01030 . 10 282 G2-like Transcription Factor Family AT5G16560 51.8 7.3e-48 188.3
Chy04g00122 . 191 396 G2-like Transcription Factor Family AT5G16560 51.7 9.5e-40 161.4
Chy04g00565 CCT 1 160 G2-like Transcription Factor Family AT5G42630 60.0 2.5e-37 152.5
Chy10g01118 . 19 258 G2-like Transcription Factor Family AT1G25550 52.7 2.0e-49 193.0
Chy08g00237 . 1 302 G2-like Transcription Factor Family AT5G05090 56.5 3.0e-74 275.4
Chy04g01682 . 1 287 G2-like Transcription Factor Family AT5G05090 55.4 1.1e-71 266.9
Chy06g00365 . 12 316 G2-like Transcription Factor Family AT4G13640 57.2 5.7e-66 248.1
Chy06g00365 . 12 316 G2-like Transcription Factor Family AT3G24120 59.2 1.5e-82 303.1
Chy11g01047 . 22 167 G2-like Transcription Factor Family AT3G24120 64.2 5.2e-43 171.8
Chy01g00844 . 7 157 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Chy04g00796 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Chy02g00490 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Chy04g01368 . 33 265 G2-like Transcription Factor Family AT1G69580 50.4 6.1e-40 161.8
Chy01g00844 . 5 373 G2-like Transcription Factor Family AT1G79430 53.9 3.6e-83 305.4
Chy11g01047 . 1 365 G2-like Transcription Factor Family AT1G79430 51.4 1.3e-75 280.4
Chy06g00365 . 39 203 G2-like Transcription Factor Family AT1G79430 63.6 6.9e-42 168.3
Chy04g01368 . 72 266 G2-like Transcription Factor Family AT5G18240 52.5 4.9e-39 158.7
Chy02g00491 . 54 262 G2-like Transcription Factor Family AT2G01060 64.3 1.4e-51 199.9
Chy08g00237 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 1.3e-90 330.1
Chy04g01682 . 1 287 G2-like Transcription Factor Family AT3G10760 58.5 9.9e-83 303.9
Chy08g00237 . 1 203 G2-like Transcription Factor Family AT2G40970 60.7 6.0e-61 231.1
Chy04g01682 . 1 199 G2-like Transcription Factor Family AT2G40970 59.5 8.2e-58 220.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008523 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17821 PF00249 Myb_DNA-binding 1.50E-05 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00565 Chy_Chr04 FPKM 1.891773 2.498147 3.511908 4.199606 2.077257 1.428279 1.300756 8.922831 9.134836 8.928889