Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00565 ATGAACACACCATCTTCCTTCCCGGACCTCTCCTTGCAGATCAGCCTTCCGATGTCAACACTGCCATGTGAGGCCAAGGCCATGAAGCCACGAAGCTCAACCACCATGGATTCGAGTTCCAGTGGCAAAAGTGATTTGAGCCATGAAAGTGGTCTCTTCCACCTAGGGTTTGAAGCGGGAGATTTGGATGTTCCTCCTCGTCGTCCTCACCAAGCAGCTTGTTGTAATGTGCGTGACCACCGCGATTTCAAACGAAGCGGAGGCAGGGTCGGGTGTGGAGTAAGAAGAAATATCCGAGCTCCAAGAATGAGATGGACTACAACTCTTCATGCTCATTTTGTACATGCCGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTTAAGGACCTAACCCTAGCTCACGTCAAAAGCCATTTGCAGATGTACAGAACAGTGAAAAATACTGTGAAGGAAACAGCAGATGTTTGTGGAAGGCCTGAGGTTGAAGAAGATGGGATGGTTTTATCTTCTTGTGTTAAAAAATCTAACTTTGGATCAAATCATTTCCAGAGAATCCAAAGAAGTAGTTTGGTAACATCAATGCACAACAGTTGCCACAGAACCAAGTCAAACGCCGACCCTTTCGCTAAATCTAGAGGAATTAAGGTACTACGAGGCACTAAGACCCAAACGCTACCACCTCTAGCTCAATTGTTTCCAACTAACCTTGTTGTCCCTCCCCAAACTAGCTGCAAGCCGCTCCTCCATTCAAAGCCGAGTCGCATCAGATTCGATCCCAACTCAAACGTTTCCTTTGTCCAACCAAGCCTTGAGCTGACAGGAGTTGTTCCCAGCCAAATTTCGCGTCGCCCTCTGTTCTTCCCCGTGTTGTCTGAGCCGCCACGCTCTGGTCCTGTCCGTCGGTCTGCTTACTAG 945 47.94 MNTPSSFPDLSLQISLPMSTLPCEAKAMKPRSSTTMDSSSSGKSDLSHESGLFHLGFEAGDLDVPPRRPHQAACCNVRDHRDFKRSGGRVGCGVRRNIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKETADVCGRPEVEEDGMVLSSCVKKSNFGSNHFQRIQRSSLVTSMHNSCHRTKSNADPFAKSRGIKVLRGTKTQTLPPLAQLFPTNLVVPPQTSCKPLLHSKPSRIRFDPNSNVSFVQPSLELTGVVPSQISRRPLFFPVLSEPPRSGPVRRSAY* 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5954219 5960518 - Chy4G072830.1 Chy04g00565 224464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00565 314 Gene3D - 100 157 - -
Chy04g00565 314 MobiDBLite consensus disorder prediction 26 47 - -
Chy04g00565 314 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 213 IPR044847 GO:0000976|GO:0006355|GO:0010158
Chy04g00565 314 SUPERFAMILY Homeodomain-like 98 155 IPR009057 -
Chy04g00565 314 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 101 154 IPR006447 GO:0003677
Chy04g00565 314 MobiDBLite consensus disorder prediction 31 47 - -
Chy04g00565 314 Pfam Myb-like DNA-binding domain 102 153 IPR001005 -
Chy04g00565 314 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 5 213 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy03g01499 Chy04g00565 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00122 Chy-Chr4:1103395 Chy04g00565 Chy-Chr4:5954219 4.08E-33 dispersed
Chy04g00565 Chy-Chr4:5954219 Chy12g01377 Chy-Chr12:17968047 6.23E-35 dispersed
Chy07g00545 Chy-Chr7:4585329 Chy04g00565 Chy-Chr4:5954219 5.48E-20 transposed
Chy11g00943 Chy-Chr11:13051328 Chy04g00565 Chy-Chr4:5954219 1.51E-23 transposed
Chy03g01499 Chy-Chr3:17359749 Chy04g00565 Chy-Chr4:5954219 2.65E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17821 PF00249 Myb_DNA-binding 1.50E-05 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00565 - - csv:101214179 427.557