Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00612 ATGGCAAATGCTTCACTAACTTTGTTTCTGTTTCTGTCTCTGTTTCTCTTCTTATCACCGTCTACGGCTGCTGATTTCATAACTTCCTCACAAAACCTTACCCATGGCGACACTCTCGTCTCCGCAAAAGGCTTTTTCGAACTGGGTTTCTTTACCCCAGGAAATTCCACCAACCGTTACTTGGGAATTTGGTACAAAATCATCCCAGTTCGTACAATCGTTTGGGTCGCCAACAGAGAAAACCCCATCAGAAATTCTTCCGCCGTTGCTGTTCTCAAAATCAACTCTACCTCCAGCGATCTGCTCCTTTTCGAGAATGACGCTGTTGTTTGGTTTGGAAAATCGTTGAAACCAGCCAAAACTCCCAAGCTACAGCTCTTAGACAATGGAAATCTGTTGTTGAAAGACGCAGAATCGGAGGAAACTTCATGGCAAAGCTTTGATTACCCAACCGATACATTACTCCCAGGAATGAAACTCGGATGGGACTTCAAAAACGGAATCCAACGGCGATTATCCGCTTGGAAAACCTCCGATGACCCATCTCCAGGGAGTTTAACGATGGAAATGATGAACACAAGCTACCCAGAACCAGTGATGTGGAATGGGTCGAGTGAGTACATGAGAAGCGGACCATGGAACGGTCTTCAATTCAGCGCAAAACCCACATCGGCGTTACCGATTTTAGTATACAGCTATGTAAACAACAAATCCGAGCTGAGTTACAGCTACGAGCTCATCAACTCTTCCTTAATCGGAAGAATGGTGTTGAACCAAACGATATTAAGAAGAGAAGCTTTGTTATGGTCTGAACCTGAGAAAAATTGGAAGCCCTATGCGACTATGCCAAGGGATTACTGCGATACATATGGTGTCTGTGGTGCGTTTGGGAGCTGTGACATTGAGCAAGTTCCTGCTTGTCAATGTCTATTTGGATTTCATCCCAACGTACAAGAGAAATGGAATTTGATGGACTATACTGAAGGGTGTGTGAGGAATAAGCCTTTGAATTGTTCTGATAAAACTGGGTTTGCAAAGTTACCAGGGTTGAAATTGCCTGATACAAAACAATCTTGGGTTAATGAAAGTATGAGTTTGAATGAATGTAGAGAAAAGTGTTTGAGGAATTGTTCTTGTGTGGCTTTTGCTAATACTGATATTAGAGGATCTGGGACTGGTTGTGCTATTTGGTTTGGGGAACTTGTTGATATCAAAGTTGTTCGAAGAGGAGGCCAGGATTTGTATGTTAGAATGTTGGCTTCTGAATTGGAGACAAAGAAGACGAGTTCAGTTGCCGTCGGTGTTATTGTCGGAGCAGCGGCTCTATTGATTCTTGGTTTGCTTCTGATTGGGTTTTACGTGATCAGAAGCAAAAGAAGAAAGCTGGAAGCGACAGGTGCAGGAAAGGATCTTGAAGGGCAAGAAGACGATTTGGAGCTTCCATTATTCGACTTAGCTACAATATCAAATGCCACCGACAATTTTTCAAACTTCAACAAGCTTGGAGAAGGTGGTTTTGGTGCAGTCTTTAGGGGTAGACTTACAGATGGACAAGAAATTGCAGTTAAGAGGCTTTCAAGCTATTCAAGGCAAGGGACTGATGAATTCAAGAATGAAGTGATACTCATTGCCAAACTACAACATAGAAATCTTGTAAGACTTTTGGGTTGTTGCATACAAGGAGAGGAAAAGATGTTGATTTATGAGTACATGCCTAATAAGAGTTTGGACTCCTTCATTTTTGACTCTGCTAGAAAGAAGCTTTTAGATTGGTCGAAACGATTCAATATCATATGCGGAGTAGCTCGAGGTATTCTTTACCTTCATCAAGATTCGAGATTGAGGATTATACATAGGGATTTAAAAGCAAGCAATGTCTTGCTTGATATTGACCTACATCCAAAAATTTCGGACTTTGGAATGGCTAGAACATTTGGTGGGGATCAAACCGAAGGAAATACTCGGAGAGTGGTCGGAACATATGGGTATATGGCGCCAGAATACGCCATAGATGGACAATTTTCCATTAAGTCGGACGTTTTTAGTTTTGGGATTCTAATGTTGGAAGTCATAAGTGGAGAGAAAAATAGAGGTTTTTTCCGTCCTAACCACGCTCTCAACCTGATTGGCCATGCATGGAAGTTATGGGATGAAGGAAAACCATTAGAGTTGATTGATGCAAGCATTGGAGAATCATATGCTTTATCAGAAGTGTTGAGATGCATACATGTTAGTCTTTTGTGCTTGCAACAACTACCTGAGGATCGGCCAACCATGTCAAATGTAGTTTTAATGCTAAGTAGTGAGGGCTCATTGGCACAGCCAAAGCAACCAGGTTTCTACATGGAAAGAGATTCTCTTGAAGTATTTTCTGTTTCTGGCAAGAATGAATCTTCTACTACAAATGAATTAACTATTACCCTTTTGGAGGCTAGATAA 2439 41.62 MANASLTLFLFLSLFLFLSPSTAADFITSSQNLTHGDTLVSAKGFFELGFFTPGNSTNRYLGIWYKIIPVRTIVWVANRENPIRNSSAVAVLKINSTSSDLLLFENDAVVWFGKSLKPAKTPKLQLLDNGNLLLKDAESEETSWQSFDYPTDTLLPGMKLGWDFKNGIQRRLSAWKTSDDPSPGSLTMEMMNTSYPEPVMWNGSSEYMRSGPWNGLQFSAKPTSALPILVYSYVNNKSELSYSYELINSSLIGRMVLNQTILRREALLWSEPEKNWKPYATMPRDYCDTYGVCGAFGSCDIEQVPACQCLFGFHPNVQEKWNLMDYTEGCVRNKPLNCSDKTGFAKLPGLKLPDTKQSWVNESMSLNECREKCLRNCSCVAFANTDIRGSGTGCAIWFGELVDIKVVRRGGQDLYVRMLASELETKKTSSVAVGVIVGAAALLILGLLLIGFYVIRSKRRKLEATGAGKDLEGQEDDLELPLFDLATISNATDNFSNFNKLGEGGFGAVFRGRLTDGQEIAVKRLSSYSRQGTDEFKNEVILIAKLQHRNLVRLLGCCIQGEEKMLIYEYMPNKSLDSFIFDSARKKLLDWSKRFNIICGVARGILYLHQDSRLRIIHRDLKASNVLLDIDLHPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILMLEVISGEKNRGFFRPNHALNLIGHAWKLWDEGKPLELIDASIGESYALSEVLRCIHVSLLCLQQLPEDRPTMSNVVLMLSSEGSLAQPKQPGFYMERDSLEVFSVSGKNESSTTNELTITLLEAR* 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6894298 6898225 + Chy4G073300.1 Chy04g00612 224511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00612 812 PANTHER - 23 809 - -
Chy04g00612 812 CDD STKc_IRAK 501 766 - -
Chy04g00612 812 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524
Chy04g00612 812 SUPERFAMILY Protein kinase-like (PK-like) 480 766 IPR011009 -
Chy04g00612 812 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Chy04g00612 812 Pfam Protein tyrosine and serine/threonine kinase 499 764 IPR001245 GO:0004672|GO:0006468
Chy04g00612 812 CDD B_lectin 33 150 IPR001480 -
Chy04g00612 812 CDD PAN_AP_plant 335 417 - -
Chy04g00612 812 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Chy04g00612 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Chy04g00612 812 Gene3D - 20 147 IPR036426 -
Chy04g00612 812 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 809 - -
Chy04g00612 812 SMART blect_4 30 150 IPR001480 -
Chy04g00612 812 Gene3D Phosphorylase Kinase; domain 1 470 570 - -
Chy04g00612 812 ProSiteProfiles PAN/Apple domain profile. 338 419 IPR003609 -
Chy04g00612 812 Pfam PAN-like domain 338 404 IPR003609 -
Chy04g00612 812 Pfam D-mannose binding lectin 72 176 IPR001480 -
Chy04g00612 812 Gene3D Transferase(Phosphotransferase) domain 1 571 777 - -
Chy04g00612 812 ProSiteProfiles Protein kinase domain profile. 495 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00612 812 Pfam S-locus glycoprotein domain 209 316 IPR000858 GO:0048544
Chy04g00612 812 Pfam Domain of unknown function (DUF3403) 767 812 IPR021820 GO:0004674
Chy04g00612 812 Gene3D Hepatocyte Growth Factor 335 418 - -
Chy04g00612 812 SMART serkin_6 495 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00612 812 PIRSF SRK 1 812 IPR024171 GO:0004674
Chy04g00612 812 SMART ntp_6 339 418 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00394 Chy-Chr1:2800963 Chy04g00612 Chy-Chr4:6894298 5.22E-56 dispersed
Chy04g00612 Chy-Chr4:6894298 Chy12g00999 Chy-Chr12:15218140 0 dispersed
Chy06g01737 Chy-Chr6:20218173 Chy04g00612 Chy-Chr4:6894298 1.59E-142 dispersed
Chy12g00987 Chy-Chr12:15147800 Chy04g00612 Chy-Chr4:6894298 1.45E-85 dispersed
Chy12g01037 Chy-Chr12:15569969 Chy04g00612 Chy-Chr4:6894298 1.00E-13 dispersed
Chy12g01435 Chy-Chr12:18358815 Chy04g00612 Chy-Chr4:6894298 4.37E-115 dispersed
Chy04g00612 Chy-Chr4:6894298 Chy04g00613 Chy-Chr4:6919317 0 tandem
Chy01g02019 Chy-Chr1:25086402 Chy04g00612 Chy-Chr4:6894298 1.68E-152 transposed
Chy12g00985 Chy-Chr12:15128749 Chy04g00612 Chy-Chr4:6894298 6.47E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71178 PF07714 PK_Tyr_Ser-Thr 5.20E-48 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00612 - - csv:101216184 1550.8