Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00644 ATGGCAATGGAGGTAAAGCAAAAGTTCTTCCACGGAACGCTTGAGGTTACCGTCTTTCATGCAACGGCATACACGCCCTCTTCACCTTTGGATTGCCTATTTGCTGGTGGCAAGTGTAGCTATGTGACAATTAAGATAGACAACAAGGAGGTTGCCCAGACAAGCCATGAACAGGACCGTGTTTGGAACCAGACATTCCGAGTTCTATGTGCACATCCATTGACTTCTACCGTCACCATTACATTGAAAACATCTCGTTCTGTCTTGGGTAAATTCTATATCCAAGCCCAACAGATTTTGAAAGAAGCAAGTTTTATCAATGGTTTCTTTCCGCTTCTTATGGAAAATGGGAAGCCAAGTCCGGAGCTCAAACTTCGATTCATGTTGTGGTTTAAACCAGCAGTATATGAATTAAGCTGGAAAAAGATGCTGGGAAATGGAGAATACAAGGGGCTGAGAAATGCAACGTTTCCTTTAAGGTCCAACTGTCACGTGACACTATATCAAGATGCTCACCACCTCCCTACTTTTCAACCTCCATTTCATGGTTCAAGTACACCAAGAAGGCTATGGGAAGATGTATACAAGGCCATAGATAATGCAAAGCATTTGGTTTACATTGCAGGCTGGTCCTTCAATCCAAAGATGGTGCTGGTGAGGGACTCTCAGACCGATATACCCTATGCTTTAGGAGTAAAGCTTGGAGAGTTGTTGAAGCAAAAGGCAGAGGAAGGAGTAGCTGTGAGAATACTGATTTGGGATGATGAAACATCTCTTCCCATCATCAAGAATGCCGGGATAATGAACACACATGATGAAGATGCTCGGGCATATTTCTTGCACTCAAAAGTCATATGTAGGTTGTGCCCCAAATTGCATCCTATGTCTCCACCAATTTTCTCTCATCATCAGAAAATCATAATCGTAGATGCTCAAACTCACATCAATGCACAGAACAGGGAGATTATGAGTTTCATTGGTGGTTTAGATCTCTGTGATGGTCGCTACGATACAGAACAACATTCATTGTTCCATACTTTGAACACAGAATCCCACTGTCGTGATTTCTATCAGACGAGTATATCGGGTGCCAAGCTTCAAAAAGGAGGGCCAAGAGAGCCATGGCATGATGTTCACGCTTGTGTAACAGGTGAAGCTGCTTGGGATATATTAACAAACTTTGAGCAACGATGGACTAAGCAATCGGATGCTTCGTTGTTAGTACCGACAAGCATCTTATTAAAATTGATGCCCCAACTCGAATCAAACACAAACCCACAAAAGGATTGGAATGTGCAAGTTTTTCGATCAATTGACCATTTGTCTGCCAGTCAAATGTTCAGAAACATGACCACTGAACGAACCATCCACGAAGCTTATGTTGAAGCTATCAGGCGAGCTGAGAGATTTATTTACATCGAAAACCAATACTTTATTGGAGGGTGTCATTTTTGGGACAGAGATCAACACTGTGGATGCACAAATTTGATACCGATTGAGATTGCGCTAAAGGTGGCTAATAAAATCAAGGCAAGGGAAAGGTTCGCAGTTTACATAGTGATTCCAATGTGGCCAGAAGGATCACCAGAGAGTGAATCGGTTGAGGATATGCTACATTGGACAAGGCAGACAATGACAATGATGTATAGACTGATTGGAGAAGCAATCCAAGAAACTGGGGAAAAGGCCCACCCAAGAGATTACTTGAATTTCTTTTGCCTTGCAAACAGAGAGGAAGAGAGAAAGTGGGACTTTATTCCCCCACACAGTCCCCAACATGCAACACAGTACTGGAATGCCCAACAGCATCGGAGGTTCATGATCTATGTCCATTCCAAGGTCATGATAGTGGACGATCTGTACATTGTGATTGGATCCGCAAACGTGAATCAGAGGTCCATGGACGGAGAGCGAGATACAGAGATAGCAATGGGATGCTACCAAATAGAAAACGAGGGAGAAGAGTTACCCAATGGAAGAGACATTTCAACATTCCGATTGTCGCTTTGGTACGAACATACAGGAGGATTCGAAGAAGTGTTCTTAAACCCAGAAAGTTTGAAATGCGTTGAAAGGGTTCGATCGATAGGGGATAAATCGTGGAAAATTTACAGCGGAGAAGAAGTTGAAGATATGAAAGGGGTTCACATGGTAACGTACCCAGTGAAGGTGAAAGAAGATGGGAGGATGGAGGATTTGGAAGAAAATGGAGGGCATTTTCCTGATACGAAATGCCCAATTAAAGGAAGAAGATCAATGATGTTGCCACCCATTTTCACAACCTAG 2286 42.96 MAMEVKQKFFHGTLEVTVFHATAYTPSSPLDCLFAGGKCSYVTIKIDNKEVAQTSHEQDRVWNQTFRVLCAHPLTSTVTITLKTSRSVLGKFYIQAQQILKEASFINGFFPLLMENGKPSPELKLRFMLWFKPAVYELSWKKMLGNGEYKGLRNATFPLRSNCHVTLYQDAHHLPTFQPPFHGSSTPRRLWEDVYKAIDNAKHLVYIAGWSFNPKMVLVRDSQTDIPYALGVKLGELLKQKAEEGVAVRILIWDDETSLPIIKNAGIMNTHDEDARAYFLHSKVICRLCPKLHPMSPPIFSHHQKIIIVDAQTHINAQNREIMSFIGGLDLCDGRYDTEQHSLFHTLNTESHCRDFYQTSISGAKLQKGGPREPWHDVHACVTGEAAWDILTNFEQRWTKQSDASLLVPTSILLKLMPQLESNTNPQKDWNVQVFRSIDHLSASQMFRNMTTERTIHEAYVEAIRRAERFIYIENQYFIGGCHFWDRDQHCGCTNLIPIEIALKVANKIKARERFAVYIVIPMWPEGSPESESVEDMLHWTRQTMTMMYRLIGEAIQETGEKAHPRDYLNFFCLANREEERKWDFIPPHSPQHATQYWNAQQHRRFMIYVHSKVMIVDDLYIVIGSANVNQRSMDGERDTEIAMGCYQIENEGEELPNGRDISTFRLSLWYEHTGGFEEVFLNPESLKCVERVRSIGDKSWKIYSGEEVEDMKGVHMVTYPVKVKEDGRMEDLEENGGHFPDTKCPIKGRRSMMLPPIFTT* 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7373189 7375833 + Chy4G073620.1 Chy04g00644 224543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00644 761 SMART pld_4 606 633 IPR001736 GO:0003824
Chy04g00644 761 SMART pld_4 300 335 IPR001736 GO:0003824
Chy04g00644 761 Pfam Phospholipase D Active site motif 300 335 IPR001736 GO:0003824
Chy04g00644 761 Pfam Phospholipase D Active site motif 607 633 IPR001736 GO:0003824
Chy04g00644 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 129 IPR035892 -
Chy04g00644 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 335 IPR001736 GO:0003824
Chy04g00644 761 Pfam Phospholipase D C terminal 678 750 IPR024632 -
Chy04g00644 761 Gene3D Endonuclease Chain A 445 652 - -
Chy04g00644 761 Pfam C2 domain 12 111 IPR000008 -
Chy04g00644 761 Gene3D Endonuclease Chain A 173 432 - -
Chy04g00644 761 SUPERFAMILY Phospholipase D/nuclease 144 409 - -
Chy04g00644 761 PIRSF PLD_plant 2 761 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Chy04g00644 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824
Chy04g00644 761 Gene3D C2 domain 2 131 IPR035892 -
Chy04g00644 761 PANTHER PHOSPHOLIPASE D 7 761 IPR015679 -
Chy04g00644 761 PANTHER PHOSPHOLIPASE D ALPHA 4 7 761 - -
Chy04g00644 761 SUPERFAMILY Phospholipase D/nuclease 424 690 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00644 K01115 PLD1_2; phospholipase D1/2 [EC:3.1.4.4] - csv:101206396 1575.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00644 Chy-Chr4:7373189 Chy07g01611 Chy-Chr7:20229345 0 dispersed
Chy04g00644 Chy-Chr4:7373189 Chy01g02000 Chy-Chr1:24975703 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g191 . . . Bda10g00858 . Bpe10g00689 . . . . Cma01g00068 . Car01g00054 . Sed06g2216 . . Bhi01g03327 Tan04g2749 Cmetu04g0608 Lac12g2427 Hepe02g1477 . . Cla07g01298 Cam07g1199 Cec07g1483 Cco07g1442 Clacu07g1366 Cmu07g1343 Cre07g1725 . . . . . . Chy04g00644 . . . . . . . . Bma15g00335 . Cmo01g00070 . . . . . Cpe02g01720 . . . . . . . . . . . . . . . Lsi07g00563 Csa03g04088 . Cme04g01195
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g02000 . 313 1121 Phospholipase D Gene Family (Wang group) AT1G52570 80.8 0.0e+00 1405.2
Chy07g01611 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 75.5 0.0e+00 1335.9
Chy03g01122 . 21 832 Phospholipase D Gene Family (Wang group) AT1G52570 64.4 0.0e+00 1125.2
Chy04g00644 . 31 762 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.5e-269 924.1
Chy01g02000 . 318 1121 Phospholipase D Gene Family (Wang group) AT3G15730 81.4 0.0e+00 1411.0
Chy07g01611 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 75.1 0.0e+00 1340.1
Chy03g01122 . 21 832 Phospholipase D Gene Family (Wang group) AT3G15730 65.0 0.0e+00 1123.6
Chy03g01122 . 96 832 Phospholipase D Gene Family (Wang group) AT5G25370 66.9 3.0e-305 1044.3
Chy07g01611 . 72 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 2.6e-293 1004.6
Chy01g02000 . 385 1121 Phospholipase D Gene Family (Wang group) AT5G25370 63.7 5.4e-291 996.9
Chy11g02001 . 127 1096 Phospholipase D Gene Family (Wang group) AT2G42010 71.2 0.0e+00 1444.5
Chy06g01975 . 14 852 Phospholipase D Gene Family (Wang group) AT2G42010 68.7 0.0e+00 1239.2
Chy03g01048 . 4 879 Phospholipase D Gene Family (Wang group) AT2G42010 51.5 3.3e-268 921.8
Chy02g00534 . 4 856 Phospholipase D Gene Family (Wang group) AT2G42010 52.0 3.5e-262 901.7
Chy11g02001 . 329 1096 Phospholipase D Gene Family (Wang group) AT4G00240 78.2 0.0e+00 1258.8
Chy06g01975 . 82 852 Phospholipase D Gene Family (Wang group) AT4G00240 69.0 0.0e+00 1126.7
Chy03g01048 . 65 879 Phospholipase D Gene Family (Wang group) AT4G00240 53.9 2.9e-255 878.2
Chy02g00534 . 71 856 Phospholipase D Gene Family (Wang group) AT4G00240 54.7 2.3e-252 868.6
Chy11g02001 . 267 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.5 2.4e-247 851.7
Chy06g01975 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.8 6.6e-245 843.6
Chy11g02001 . 251 1096 Phospholipase D Gene Family (Wang group) AT4G11840 64.5 0.0e+00 1145.2
Chy06g01975 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11840 64.8 0.0e+00 1128.6
Chy02g00534 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 50.9 1.4e-247 852.8
Chy11g02001 . 257 1096 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1206.4
Chy06g01975 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11850 67.8 0.0e+00 1191.0
Chy02g00534 . 4 856 Phospholipase D Gene Family (Wang group) AT4G11850 51.0 6.1e-254 874.0
Chy02g00534 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.6 4.3e-298 1020.4
Chy03g01048 . 7 708 Phospholipase D Gene Family (Wang group) AT4G35790 63.8 1.6e-276 948.7
Chy11g02001 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.7 9.5e-197 683.7
Chy05g01066 . 36 1111 Phospholipase D Gene Family (Wang group) AT3G05630 63.0 0.0e+00 1339.7
Chy11g01535 . 119 1184 Phospholipase D Gene Family (Wang group) AT3G05630 61.3 0.0e+00 1315.8
Chy11g01535 . 80 1068 Phospholipase D Gene Family (Wang group) AT3G16785 73.2 0.0e+00 1450.6
Chy05g01066 . 34 989 Phospholipase D Gene Family (Wang group) AT3G16785 62.7 0.0e+00 1203.7
Chy01g02000 . 318 1121 Phospholipase D Gene Family (Wang group) AT3G15730 81.4 0.0e+00 1411.0
Chy07g01611 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 75.1 0.0e+00 1340.1
Chy03g01122 . 21 832 Phospholipase D Gene Family (Wang group) AT3G15730 65.0 0.0e+00 1123.6
Chy01g02000 . 313 1121 Phospholipase D Gene Family (Wang group) AT1G52570 80.8 0.0e+00 1405.2
Chy07g01611 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 75.5 0.0e+00 1335.9
Chy03g01122 . 21 832 Phospholipase D Gene Family (Wang group) AT1G52570 64.4 0.0e+00 1125.2
Chy11g02001 . 127 1096 Phospholipase D Gene Family (Wang group) AT2G42010 71.2 0.0e+00 1444.5
Chy06g01975 . 14 852 Phospholipase D Gene Family (Wang group) AT2G42010 68.7 0.0e+00 1239.2
Chy03g01048 . 4 879 Phospholipase D Gene Family (Wang group) AT2G42010 51.5 3.3e-268 921.8
Chy02g00534 . 4 856 Phospholipase D Gene Family (Wang group) AT2G42010 52.0 3.5e-262 901.7
Chy11g02001 . 329 1096 Phospholipase D Gene Family (Wang group) AT4G00240 78.2 0.0e+00 1258.8
Chy06g01975 . 82 852 Phospholipase D Gene Family (Wang group) AT4G00240 69.0 0.0e+00 1126.7
Chy03g01048 . 65 879 Phospholipase D Gene Family (Wang group) AT4G00240 53.9 2.9e-255 878.2
Chy02g00534 . 71 856 Phospholipase D Gene Family (Wang group) AT4G00240 54.7 2.3e-252 868.6
Chy11g02001 . 257 1096 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1206.4
Chy06g01975 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11850 67.8 0.0e+00 1191.0
Chy02g00534 . 4 856 Phospholipase D Gene Family (Wang group) AT4G11850 51.0 6.1e-254 874.0
Chy11g02001 . 267 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.5 2.4e-247 851.7
Chy06g01975 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.8 6.6e-245 843.6
Chy11g02001 . 251 1096 Phospholipase D Gene Family (Wang group) AT4G11840 64.5 0.0e+00 1145.2
Chy06g01975 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11840 64.8 0.0e+00 1128.6
Chy02g00534 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 50.9 1.4e-247 852.8
Chy02g00534 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.6 4.3e-298 1020.4
Chy03g01048 . 7 708 Phospholipase D Gene Family (Wang group) AT4G35790 63.8 1.6e-276 948.7
Chy11g02001 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.7 9.5e-197 683.7
Chy04g00644 . 31 762 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.5e-269 924.1
Chy03g01122 . 96 832 Phospholipase D Gene Family (Wang group) AT5G25370 66.9 3.0e-305 1044.3
Chy07g01611 . 72 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 2.6e-293 1004.6
Chy01g02000 . 385 1121 Phospholipase D Gene Family (Wang group) AT5G25370 63.7 5.4e-291 996.9
Chy11g01535 . 80 1068 Phospholipase D Gene Family (Wang group) AT3G16785 73.2 0.0e+00 1450.6
Chy05g01066 . 34 989 Phospholipase D Gene Family (Wang group) AT3G16785 62.7 0.0e+00 1203.7
Chy05g01066 . 36 1111 Phospholipase D Gene Family (Wang group) AT3G05630 63.0 0.0e+00 1339.7
Chy11g01535 . 119 1184 Phospholipase D Gene Family (Wang group) AT3G05630 61.3 0.0e+00 1315.8
Chy01g02000 . 318 1121 Phospholipase D Gene Family (Wang group) AT3G15730 81.4 0.0e+00 1411.0
Chy07g01611 . 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 75.1 0.0e+00 1340.1
Chy03g01122 . 21 832 Phospholipase D Gene Family (Wang group) AT3G15730 65.0 0.0e+00 1123.6
Chy01g02000 . 313 1121 Phospholipase D Gene Family (Wang group) AT1G52570 80.8 0.0e+00 1405.2
Chy07g01611 . 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 75.5 0.0e+00 1335.9
Chy03g01122 . 21 832 Phospholipase D Gene Family (Wang group) AT1G52570 64.4 0.0e+00 1125.2
Chy03g01122 . 96 832 Phospholipase D Gene Family (Wang group) AT5G25370 66.9 3.0e-305 1044.3
Chy07g01611 . 72 808 Phospholipase D Gene Family (Wang group) AT5G25370 63.5 2.6e-293 1004.6
Chy01g02000 . 385 1121 Phospholipase D Gene Family (Wang group) AT5G25370 63.7 5.4e-291 996.9
Chy04g00644 . 31 762 Phospholipase D Gene Family (Wang group) AT1G55180 59.8 4.5e-269 924.1
Chy11g02001 . 127 1096 Phospholipase D Gene Family (Wang group) AT2G42010 71.2 0.0e+00 1444.5
Chy06g01975 . 14 852 Phospholipase D Gene Family (Wang group) AT2G42010 68.7 0.0e+00 1239.2
Chy03g01048 . 4 879 Phospholipase D Gene Family (Wang group) AT2G42010 51.5 3.3e-268 921.8
Chy02g00534 . 4 856 Phospholipase D Gene Family (Wang group) AT2G42010 52.0 3.5e-262 901.7
Chy11g02001 . 329 1096 Phospholipase D Gene Family (Wang group) AT4G00240 78.2 0.0e+00 1258.8
Chy06g01975 . 82 852 Phospholipase D Gene Family (Wang group) AT4G00240 69.0 0.0e+00 1126.7
Chy03g01048 . 65 879 Phospholipase D Gene Family (Wang group) AT4G00240 53.9 2.9e-255 878.2
Chy02g00534 . 71 856 Phospholipase D Gene Family (Wang group) AT4G00240 54.7 2.3e-252 868.6
Chy11g02001 . 257 1096 Phospholipase D Gene Family (Wang group) AT4G11850 69.1 0.0e+00 1206.4
Chy06g01975 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11850 67.8 0.0e+00 1191.0
Chy02g00534 . 4 856 Phospholipase D Gene Family (Wang group) AT4G11850 51.0 6.1e-254 874.0
Chy11g02001 . 267 880 Phospholipase D Gene Family (Wang group) AT4G11830 66.5 2.4e-247 851.7
Chy06g01975 . 12 637 Phospholipase D Gene Family (Wang group) AT4G11830 64.8 6.6e-245 843.6
Chy11g02001 . 251 1096 Phospholipase D Gene Family (Wang group) AT4G11840 64.5 0.0e+00 1145.2
Chy06g01975 . 7 852 Phospholipase D Gene Family (Wang group) AT4G11840 64.8 0.0e+00 1128.6
Chy02g00534 . 4 846 Phospholipase D Gene Family (Wang group) AT4G11840 50.9 1.4e-247 852.8
Chy02g00534 . 1 689 Phospholipase D Gene Family (Wang group) AT4G35790 70.6 4.3e-298 1020.4
Chy03g01048 . 7 708 Phospholipase D Gene Family (Wang group) AT4G35790 63.8 1.6e-276 948.7
Chy11g02001 . 274 924 Phospholipase D Gene Family (Wang group) AT4G35790 50.7 9.5e-197 683.7
Chy11g01535 . 80 1068 Phospholipase D Gene Family (Wang group) AT3G16785 73.2 0.0e+00 1450.6
Chy05g01066 . 34 989 Phospholipase D Gene Family (Wang group) AT3G16785 62.7 0.0e+00 1203.7
Chy05g01066 . 36 1111 Phospholipase D Gene Family (Wang group) AT3G05630 63.0 0.0e+00 1339.7
Chy11g01535 . 119 1184 Phospholipase D Gene Family (Wang group) AT3G05630 61.3 0.0e+00 1315.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012312 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00644 Chy_Chr04 FPKM 15.370833 14.265523 19.533844 21.015429 15.98048 11.38942 23.505495 13.942593 17.070101 16.050947