Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00655 ATGGAGGAAAATTTGTCAAATTTAACTTCAGCTTCTGGTGAAGCAAGTGCCTGCTCCGGCAACCATTCCGATCAGATTCCGACCAACTATTCCGGCCAGTTATTTTCCACCCCACCACCACCAAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCAGATGCGGAAGTGATAGCTTTATCGCCGAAGACGCTTATGGCGACGAATAGATTTGTATGCGAGATCTGTAGTAAAGGGTTTCAGAGAGATCAGAATCTTCAACTTCATAGAAGAGGACACAATCTTCCATGGAAATTAAAGCAAAGGGCAAACAAAGAAGTAATAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGTTGTGTTCATCATGATCCATCAAGAGCATTAGGGGACTTGACAGGAATCAAGAAGCACTTTTGTAGAAAACATGGTGAGAAGAAATGGAAATGTGATAAGTGCTCTAAGAGGTATGCAGTTCAATCAGATTGGAAAGCTCATTCCAAGACTTGTGGCACCAGAGAGTATAGATGTGACTGTGGAACCCTTTTCTCAAGTGCTTCCCCTTCTTCTCCACATATGTCAGCCACAGCACTTCTTCAGAAAGCAGCTCAAATGGGATCTACCATGAGCAGCAACAGCAACAACAACAATAATAATAATGCTGAGCCACCACACACAATCATTCCCCATACAAATTGTAATTTTGGCCTTAACTTATCATCCACCACCACCACCTCCTCCTCCTCACGTGACATTCATCAGAATCAAATTTTGGAAGAAGCTGCAGCAGGGCTTTCTCATGCACTGCCATTCTACAGGAACAAAATTGTTGATTTTGAAGGAGCTGGGACTTCTTTTGAATTAGACCAATTTGGAGGGGTTTTTAAGAAAAACAATGATCATCATCATCATCATCAAGCTGCAGCTGGGCTCAGTACGAGAGATTTCTTGGGGTTGAGAGCTATTTCTCATACTGAATTCTTGAGTAATATTGCAGCTGCTGGTAATTTTAGTCATTGCATTAATAATAATCATAATGTTGGTGCTGCTCAGAATCCTCATACTACTCAAATTCAAAATCAATCCACTTGGCAAGGTTAG 1101 41.51 MEENLSNLTSASGEASACSGNHSDQIPTNYSGQLFSTPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRANKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSSASPSSPHMSATALLQKAAQMGSTMSSNSNNNNNNNAEPPHTIIPHTNCNFGLNLSSTTTTSSSSRDIHQNQILEEAAAGLSHALPFYRNKIVDFEGAGTSFELDQFGGVFKKNNDHHHHHQAAAGLSTRDFLGLRAISHTEFLSNIAAAGNFSHCINNNHNVGAAQNPHTTQIQNQSTWQG* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7508627 7510966 - Chy4G073730.1 Chy04g00655 224554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00655 366 SMART c2h2final6 148 168 IPR013087 -
Chy04g00655 366 SMART c2h2final6 113 143 IPR013087 -
Chy04g00655 366 SMART c2h2final6 71 93 IPR013087 -
Chy04g00655 366 Gene3D Classic Zinc Finger 50 122 - -
Chy04g00655 366 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 184 - -
Chy04g00655 366 MobiDBLite consensus disorder prediction 1 36 - -
Chy04g00655 366 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Chy04g00655 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Chy04g00655 366 Gene3D Classic Zinc Finger 126 206 - -
Chy04g00655 366 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 7 184 - -
Chy04g00655 366 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 190 330 - -
Chy04g00655 366 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 190 330 - -
Chy04g00655 366 MobiDBLite consensus disorder prediction 1 55 - -
Chy04g00655 366 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00655 Chy-Chr4:7508627 Chy02g00663 Chy-Chr2:4027016 2.96E-99 dispersed
Chy01g02200 Chy-Chr1:26516668 Chy04g00655 Chy-Chr4:7508627 6.48E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17829 None None None None Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00655 K25870 - csv:101204728 401.749