Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy04g00666 | ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAAGAAGACGCACTTTTGGCCGGAGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTTAAAGATCCTGATTTCGCTCCCTCTCTCACTCATCGCTCTAACATTGACCTCAAGGATAAATGGCGTAATTTGAGTGTCAGCACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCAGCTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACAACCAAACCTCTGCTCCTGCTAAGCCCAATGCATCTGCTGATGCTGCAGGGGATGATACACCAAACAGCAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCAATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTCGTTTCACAAGGGAAGCTTGAAAAGGTTCAGAATTGCTACAGAGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACTCCTAAACAAAAAGATGTCAGGCAACGAATATCACAATACAACACTACAGGAGGGGTGATGCCATCAGCAGAGACGGTGGAAGATGCAGCGAAAGTGGCTGCATACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTGGCTGCTGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCTGAAGATACAGATTCAATGCTACAGATTATAAAAGAGATGTATGAAAAATATATGGCTGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTATGACTCAAAAATGAATGAGTTACTTTCAGCTGATGGACAGGATTTCTTCACTTCATATGATGAAGTTTATGACAGTTTTGATTCTATGGGCCTGCAAGAAAACCTTCTCAGAGGGATCTATGCCTACGGTTTTGAGAAGCCATCTGCAATTCAACAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACCGGGAAGACTGCAACCTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTTGTGCAGTGCCAGGCTTTGGTCTTGGCACCCACTAGGGAACTTGCACAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTGAAGGTTCATGCTTGTGTTGGTGGGACGAGTGTACGTGAAGACCAACGCATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACACCTGGTCGTGTGTTTGATATGTTGCGTAGACAATCACTTCGCCCCGACTACATTCGGATGTTTGTATTGGATGAAGCCGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTACGATATCTTCCAGCTGCTACCATCCAAGATTCAGGTTGGGGTGTTCTCTGCCACAATGCCTCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGAATTCTTGTTAAGCGTGATGAGCTCACCTTGGAGGGTATCAAGCAGTTTTATGTCAATGTTGACAAGGAAGACTGGAAGCTCGAGACACTCTGCGATCTTTATGAGACTTTGGCCATTACACAGAGTGTCATCTTTGTCAATACTCGACGTAAAGTTGATTGGCTCACTGATAAGATGCGTAGCCGTGACCACACTGTATCTGCTACCCATGGTGACATGGACCAGAACACTCGAGATATTATCATGCGTGAGTTTCGTTCAGGTTCTTCTAGGGTTCTGATTACCACTGATCTGTTGGCCCGTGGTATTGATGTCCAGCAGGTTTCTCTTGTTATTAACTATGATCTGCCGACACAACCGGAGAACTACCTTCATCGTATTGGACGAAGTGGACGATTTGGAAGAAAGGGTGTTGCGATCAACTTTGTAACGACAGAGGACGAAAGAATGCTATTTGACATTCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCAAATGTTGCTGATCTTCTGTGA | 2052 | 43.91 | MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAAPKAKAIVAAISNNQTSAPAKPNASADAAGDDTPNSSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYRVKKDNSLAVKTPTPKQKDVRQRISQYNTTGGVMPSAETVEDAAKVAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYMAGLAPEGSQFDARQYDSKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL* | 684 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7687592 | 7696977 | + | Chy4G073840.1 | Chy04g00666 | 224565 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy04g00666 | 683 | SMART | ultradead3 | 329 | 526 | IPR014001 | - | |
Chy04g00666 | 683 | SMART | h15plus2 | 112 | 177 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Chy04g00666 | 683 | Gene3D | - | 8 | 87 | - | - | |
Chy04g00666 | 683 | Gene3D | - | 519 | 683 | IPR027417 | - | |
Chy04g00666 | 683 | ProSiteProfiles | Myb-like domain profile. | 1 | 57 | IPR001005 | - | |
Chy04g00666 | 683 | Pfam | Myb-like DNA-binding domain | 5 | 56 | IPR001005 | - | |
Chy04g00666 | 683 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 310 | 338 | IPR014014 | GO:0003724 | |
Chy04g00666 | 683 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 379 | 664 | IPR027417 | - | |
Chy04g00666 | 683 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 457 | 465 | IPR000629 | - | |
Chy04g00666 | 683 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 341 | 511 | IPR014001 | - | |
Chy04g00666 | 683 | PANTHER | RNA HELICASE | 293 | 683 | - | - | |
Chy04g00666 | 683 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 522 | 683 | IPR001650 | - | |
Chy04g00666 | 683 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Chy04g00666 | 683 | CDD | SF2_C_DEAD | 523 | 653 | - | - | |
Chy04g00666 | 683 | SMART | sant | 4 | 59 | IPR001005 | - | |
Chy04g00666 | 683 | Pfam | Helicase conserved C-terminal domain | 536 | 644 | IPR001650 | - | |
Chy04g00666 | 683 | MobiDBLite | consensus disorder prediction | 100 | 114 | - | - | |
Chy04g00666 | 683 | Gene3D | - | 111 | 198 | IPR036388 | - | |
Chy04g00666 | 683 | MobiDBLite | consensus disorder prediction | 83 | 114 | - | - | |
Chy04g00666 | 683 | Pfam | linker histone H1 and H5 family | 116 | 175 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Chy04g00666 | 683 | Gene3D | - | 300 | 518 | IPR027417 | - | |
Chy04g00666 | 683 | SUPERFAMILY | Winged helix DNA-binding domain | 111 | 193 | IPR036390 | - | |
Chy04g00666 | 683 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 61 | IPR017930 | - | |
Chy04g00666 | 683 | CDD | DEADc_EIF4A | 315 | 512 | - | - | |
Chy04g00666 | 683 | PANTHER | EUKARYOTIC INITIATION FACTOR 4A-2 | 293 | 683 | - | - | |
Chy04g00666 | 683 | SMART | helicmild6 | 563 | 644 | IPR001650 | - | |
Chy04g00666 | 683 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 114 | 182 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Chy04g00666 | 683 | Pfam | DEAD/DEAH box helicase | 335 | 496 | IPR011545 | GO:0003676|GO:0005524 | |
Chy04g00666 | 683 | CDD | SANT_TRF | 6 | 56 | - | - | |
Chy04g00666 | 683 | SUPERFAMILY | Homeodomain-like | 2 | 59 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy04g00666 | Chy-Chr4:7687592 | Chy06g01426 | Chy-Chr6:15034968 | 8.14E-63 | dispersed | |
Chy04g01199 | Chy-Chr4:18433157 | Chy04g00666 | Chy-Chr4:7687592 | 9.51E-26 | dispersed | |
Chy04g01998 | Chy-Chr4:25791319 | Chy04g00666 | Chy-Chr4:7687592 | 4.34E-52 | dispersed | |
Chy12g00802 | Chy-Chr12:12834074 | Chy04g00666 | Chy-Chr4:7687592 | 1.06E-06 | dispersed | |
Chy02g00587 | Chy-Chr2:3560160 | Chy04g00666 | Chy-Chr4:7687592 | 1.80E-09 | transposed | |
Chy02g00834 | Chy-Chr2:5296243 | Chy04g00666 | Chy-Chr4:7687592 | 4.43E-36 | transposed | |
Chy02g00916 | Chy-Chr2:5986228 | Chy04g00666 | Chy-Chr4:7687592 | 5.03E-10 | transposed | |
Chy02g01772 | Chy-Chr2:19168858 | Chy04g00666 | Chy-Chr4:7687592 | 5.50E-59 | transposed | |
Chy03g01124 | Chy-Chr3:14529662 | Chy04g00666 | Chy-Chr4:7687592 | 2.02E-74 | transposed | |
Chy05g00430 | Chy-Chr5:4650030 | Chy04g00666 | Chy-Chr4:7687592 | 1.25E-08 | transposed | |
Chy05g01208 | Chy-Chr5:16521603 | Chy04g00666 | Chy-Chr4:7687592 | 1.27E-08 | transposed | |
Chy06g00183 | Chy-Chr6:1190164 | Chy04g00666 | Chy-Chr4:7687592 | 1.53E-84 | transposed | |
Chy06g00600 | Chy-Chr6:4102024 | Chy04g00666 | Chy-Chr4:7687592 | 3.94E-29 | transposed | |
Chy06g01436 | Chy-Chr6:15304881 | Chy04g00666 | Chy-Chr4:7687592 | 2.18E-52 | transposed | |
Chy07g01729 | Chy-Chr7:20991115 | Chy04g00666 | Chy-Chr4:7687592 | 1.17E-33 | transposed | |
Chy11g01163 | Chy-Chr11:17740825 | Chy04g00666 | Chy-Chr4:7687592 | 5.14E-06 | transposed | |
Chy04g01200 | Chy-Chr4:18434086 | Chy04g00666 | Chy-Chr4:7687592 | 1.25E-143 | transposed | |
Chy01g02191 | Chy-Chr1:26465737 | Chy04g00666 | Chy-Chr4:7687592 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17830 | PF00270 | DEAD | 1.10E-39 | CL0023 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy04g00666 | K03257 | - | csv:101223055 | 818.535 |