Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00666 ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAAGAAGACGCACTTTTGGCCGGAGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTTAAAGATCCTGATTTCGCTCCCTCTCTCACTCATCGCTCTAACATTGACCTCAAGGATAAATGGCGTAATTTGAGTGTCAGCACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCAGCTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACAACCAAACCTCTGCTCCTGCTAAGCCCAATGCATCTGCTGATGCTGCAGGGGATGATACACCAAACAGCAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCAATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTCGTTTCACAAGGGAAGCTTGAAAAGGTTCAGAATTGCTACAGAGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACTCCTAAACAAAAAGATGTCAGGCAACGAATATCACAATACAACACTACAGGAGGGGTGATGCCATCAGCAGAGACGGTGGAAGATGCAGCGAAAGTGGCTGCATACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTGGCTGCTGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCTGAAGATACAGATTCAATGCTACAGATTATAAAAGAGATGTATGAAAAATATATGGCTGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTATGACTCAAAAATGAATGAGTTACTTTCAGCTGATGGACAGGATTTCTTCACTTCATATGATGAAGTTTATGACAGTTTTGATTCTATGGGCCTGCAAGAAAACCTTCTCAGAGGGATCTATGCCTACGGTTTTGAGAAGCCATCTGCAATTCAACAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACCGGGAAGACTGCAACCTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTTGTGCAGTGCCAGGCTTTGGTCTTGGCACCCACTAGGGAACTTGCACAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTGAAGGTTCATGCTTGTGTTGGTGGGACGAGTGTACGTGAAGACCAACGCATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACACCTGGTCGTGTGTTTGATATGTTGCGTAGACAATCACTTCGCCCCGACTACATTCGGATGTTTGTATTGGATGAAGCCGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATTTACGATATCTTCCAGCTGCTACCATCCAAGATTCAGGTTGGGGTGTTCTCTGCCACAATGCCTCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGAATTCTTGTTAAGCGTGATGAGCTCACCTTGGAGGGTATCAAGCAGTTTTATGTCAATGTTGACAAGGAAGACTGGAAGCTCGAGACACTCTGCGATCTTTATGAGACTTTGGCCATTACACAGAGTGTCATCTTTGTCAATACTCGACGTAAAGTTGATTGGCTCACTGATAAGATGCGTAGCCGTGACCACACTGTATCTGCTACCCATGGTGACATGGACCAGAACACTCGAGATATTATCATGCGTGAGTTTCGTTCAGGTTCTTCTAGGGTTCTGATTACCACTGATCTGTTGGCCCGTGGTATTGATGTCCAGCAGGTTTCTCTTGTTATTAACTATGATCTGCCGACACAACCGGAGAACTACCTTCATCGTATTGGACGAAGTGGACGATTTGGAAGAAAGGGTGTTGCGATCAACTTTGTAACGACAGAGGACGAAAGAATGCTATTTGACATTCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCAAATGTTGCTGATCTTCTGTGA 2052 43.91 MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAAPKAKAIVAAISNNQTSAPAKPNASADAAGDDTPNSSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYRVKKDNSLAVKTPTPKQKDVRQRISQYNTTGGVMPSAETVEDAAKVAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYMAGLAPEGSQFDARQYDSKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL* 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7687592 7696977 + Chy4G073840.1 Chy04g00666 224565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00666 683 SMART ultradead3 329 526 IPR014001 -
Chy04g00666 683 SMART h15plus2 112 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy04g00666 683 Gene3D - 8 87 - -
Chy04g00666 683 Gene3D - 519 683 IPR027417 -
Chy04g00666 683 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Chy04g00666 683 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Chy04g00666 683 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 310 338 IPR014014 GO:0003724
Chy04g00666 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 664 IPR027417 -
Chy04g00666 683 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 457 465 IPR000629 -
Chy04g00666 683 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 341 511 IPR014001 -
Chy04g00666 683 PANTHER RNA HELICASE 293 683 - -
Chy04g00666 683 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 522 683 IPR001650 -
Chy04g00666 683 MobiDBLite consensus disorder prediction 1 27 - -
Chy04g00666 683 CDD SF2_C_DEAD 523 653 - -
Chy04g00666 683 SMART sant 4 59 IPR001005 -
Chy04g00666 683 Pfam Helicase conserved C-terminal domain 536 644 IPR001650 -
Chy04g00666 683 MobiDBLite consensus disorder prediction 100 114 - -
Chy04g00666 683 Gene3D - 111 198 IPR036388 -
Chy04g00666 683 MobiDBLite consensus disorder prediction 83 114 - -
Chy04g00666 683 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy04g00666 683 Gene3D - 300 518 IPR027417 -
Chy04g00666 683 SUPERFAMILY Winged helix DNA-binding domain 111 193 IPR036390 -
Chy04g00666 683 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Chy04g00666 683 CDD DEADc_EIF4A 315 512 - -
Chy04g00666 683 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 293 683 - -
Chy04g00666 683 SMART helicmild6 563 644 IPR001650 -
Chy04g00666 683 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy04g00666 683 Pfam DEAD/DEAH box helicase 335 496 IPR011545 GO:0003676|GO:0005524
Chy04g00666 683 CDD SANT_TRF 6 56 - -
Chy04g00666 683 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00666 Chy-Chr4:7687592 Chy06g01426 Chy-Chr6:15034968 8.14E-63 dispersed
Chy04g01199 Chy-Chr4:18433157 Chy04g00666 Chy-Chr4:7687592 9.51E-26 dispersed
Chy04g01998 Chy-Chr4:25791319 Chy04g00666 Chy-Chr4:7687592 4.34E-52 dispersed
Chy12g00802 Chy-Chr12:12834074 Chy04g00666 Chy-Chr4:7687592 1.06E-06 dispersed
Chy02g00587 Chy-Chr2:3560160 Chy04g00666 Chy-Chr4:7687592 1.80E-09 transposed
Chy02g00834 Chy-Chr2:5296243 Chy04g00666 Chy-Chr4:7687592 4.43E-36 transposed
Chy02g00916 Chy-Chr2:5986228 Chy04g00666 Chy-Chr4:7687592 5.03E-10 transposed
Chy02g01772 Chy-Chr2:19168858 Chy04g00666 Chy-Chr4:7687592 5.50E-59 transposed
Chy03g01124 Chy-Chr3:14529662 Chy04g00666 Chy-Chr4:7687592 2.02E-74 transposed
Chy05g00430 Chy-Chr5:4650030 Chy04g00666 Chy-Chr4:7687592 1.25E-08 transposed
Chy05g01208 Chy-Chr5:16521603 Chy04g00666 Chy-Chr4:7687592 1.27E-08 transposed
Chy06g00183 Chy-Chr6:1190164 Chy04g00666 Chy-Chr4:7687592 1.53E-84 transposed
Chy06g00600 Chy-Chr6:4102024 Chy04g00666 Chy-Chr4:7687592 3.94E-29 transposed
Chy06g01436 Chy-Chr6:15304881 Chy04g00666 Chy-Chr4:7687592 2.18E-52 transposed
Chy07g01729 Chy-Chr7:20991115 Chy04g00666 Chy-Chr4:7687592 1.17E-33 transposed
Chy11g01163 Chy-Chr11:17740825 Chy04g00666 Chy-Chr4:7687592 5.14E-06 transposed
Chy04g01200 Chy-Chr4:18434086 Chy04g00666 Chy-Chr4:7687592 1.25E-143 transposed
Chy01g02191 Chy-Chr1:26465737 Chy04g00666 Chy-Chr4:7687592 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17830 PF00270 DEAD 1.10E-39 CL0023 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00666 K03257 - csv:101223055 818.535