Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00696 ATGAGCCCAGCCAACTCTCAAAGCGACATAGCTTCATTGACTTCACCCCCGTCCCCATCGCCGCCGCATATGGCTGCTGATTCCCGGAAAAGGCCTATGGCGGTAGCCAAGGCTTTTATCAAAGAACCTGTACCTAGAAAGTCCATTGATACTTTCGGACAAAGAACCTCCCAGTATCGCGGTGTCACAAGGCATAGATGGACAGGAAGATATGAGGCACATTTATGGGATAACAGCTGTAGAAAAGAGGGACAAACAAGGAAGGGAAGGCAAGTTTATCTTGGGGGTTATGATAAAGAAGAGAAAGCGGCACGAGCTTACGATCTAGCTGCACTAAAATATTGGGGATCAACAACACATATAAATTTTCCACTAAGCACTTACGAAAGCGAGCTGGAAGAAATGAAGAACATGACCAGACAAGAGTTTGTAGCCAATTTGAGAAGGAAAAGTAGTGGATTCTCAAGAGGAGCCTCAATGTACAGAGGAGTTACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATAGGAAGAGTAGCAGGAAATAAAGATTTGTACCTTGGGACATTTAGTACACAAGAGGAGGCTGCGGAGGCCTACGACATTGCAGCAATCAAGTTTAGGGGGACGAGTGCTGTGACAAATTTTGACATTAGTAGGTATGACGTAAAGAGGATTTGCTCTAGTTCGACTTTGATTGCTGGTGACCTTGCAAAACGTTCACCATTAAAGGACGGTACTCCCTCGACAACTGAAGACTATACCACTTGTGCTTCTCCATCATCGTCCTCACAGCCTCTCTTGGCCATTACGGATGGCAGTGCTGAGAGTCACCACGAGTTGGCTGACATGGTTTGGTGTGACAACGCTGTTGCAGATGAAGTTAATCAACACCATGAGAATGTAGCAAAGATGGACAATGATTTGAGTTTGATGGGTTCGAGCAATAGAACGATAGATCCATCGGCAAAGTGCTCTCCAGTGCAAAACAATGAGGAGTTTGGGATTGGTGTTGGGGGAGGAGAGTATTCGCAAGGATATTTTTCAATGCAAGAAGAAAAGTATGAAGAGGGGGATCAAAATAGGCAAATGAGTGTAACATTGGGTCATCATCATGCTCCAATGTTTGCTCTATGGAATCAATGA 1149 44.82 MSPANSQSDIASLTSPPSPSPPHMAADSRKRPMAVAKAFIKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGSTTHINFPLSTYESELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPLKDGTPSTTEDYTTCASPSSSSQPLLAITDGSAESHHELADMVWCDNAVADEVNQHHENVAKMDNDLSLMGSSNRTIDPSAKCSPVQNNEEFGIGVGGGEYSQGYFSMQEEKYEEGDQNRQMSVTLGHHHAPMFALWNQ* 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8352238 8355170 + Chy4G074140.1 Chy04g00696 224595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00696 382 CDD AP2 159 220 IPR001471 GO:0003700|GO:0006355
Chy04g00696 382 MobiDBLite consensus disorder prediction 241 269 - -
Chy04g00696 382 ProSiteProfiles AP2/ERF domain profile. 160 218 IPR001471 GO:0003700|GO:0006355
Chy04g00696 382 SUPERFAMILY DNA-binding domain 159 220 IPR016177 GO:0003677
Chy04g00696 382 SMART rav1_2 160 224 IPR001471 GO:0003700|GO:0006355
Chy04g00696 382 SMART rav1_2 58 130 IPR001471 GO:0003700|GO:0006355
Chy04g00696 382 Gene3D AP2/ERF domain 57 126 IPR036955 GO:0003700|GO:0006355
Chy04g00696 382 Gene3D AP2/ERF domain 160 220 IPR036955 GO:0003700|GO:0006355
Chy04g00696 382 SUPERFAMILY DNA-binding domain 57 126 IPR016177 GO:0003677
Chy04g00696 382 Pfam AP2 domain 161 210 IPR001471 GO:0003700|GO:0006355
Chy04g00696 382 Pfam AP2 domain 58 116 IPR001471 GO:0003700|GO:0006355
Chy04g00696 382 MobiDBLite consensus disorder prediction 1 32 - -
Chy04g00696 382 MobiDBLite consensus disorder prediction 245 269 - -
Chy04g00696 382 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Chy04g00696 382 PRINTS Ethylene responsive element binding protein signature 200 220 IPR001471 GO:0003700|GO:0006355
Chy04g00696 382 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 34 344 - -
Chy04g00696 382 CDD AP2 57 126 IPR001471 GO:0003700|GO:0006355
Chy04g00696 382 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 34 344 - -
Chy04g00696 382 ProSiteProfiles AP2/ERF domain profile. 58 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00817 Chy-Chr2:5154355 Chy04g00696 Chy-Chr4:8352238 1.45E-129 dispersed
Chy04g00696 Chy-Chr4:8352238 Chy07g00211 Chy-Chr7:1699930 1.10E-129 dispersed
Chy11g01294 Chy-Chr11:19151202 Chy04g00696 Chy-Chr4:8352238 2.75E-09 dispersed
Chy04g00696 Chy-Chr4:8352238 Chy03g01615 Chy-Chr3:18090114 2.74E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17834 PF00847 AP2 4.50E-13 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00696 K09285 - csv:101205762 753.821