Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00712 ATGAGACCTTTCCAGCCCCCTCCAGCTACAAATCCTCCCACCGATCGTACTCGTCGCCGCCCCCATCTAAATCTCCATCTTCCTCAACGTGACAACACATCTTTGGCTGTTCCTCTTCCTTTGCCTCCTACCTCCTCCAACTCTGCCCCTCCTCCTTCCACCAGTCAACTCCACAACGCCAATCGCCCCCCTGACCCTCTTCCTCCCCAACGTCAACCTTTCACCCTTTCTGACTTTGAGCGTGTCAGCCGAATCGGAAGTGGATGTGGAGGTACCGTTTACAAAGTCCTTCACCGTCCCACCGGTCATGTTTATGCTCTCAAGGTCATTTACGGAAACCATGAAGATGCGGTTAGGCTTCAGATGTGCCGTGAGGTCGAGATCCTTCGTGACGTTGACAATCCCTATGTTGTTAAGTGCCACGATATGTTTGATCATAACGGTGAAATCCAGGTTCTTCTTGAGTATATGGATCGGGGTTCTTTGGAAGGAACACACATCCCTCAAGAACATCAACTCTCTGATTTGGCTCGCCAGATTCTTAGCGGTCTTGCTTATCTTCATAGCCGACGTATCGTTCATCGCGATATCAAACCCTCCAATCTTCTCATCAATTCTCGAAGGCAGGTTAAGATCGCTGATTTTGGCGTCGGTCGAATCTTGGAACAGACTATGGACCCTTGTAATTCCTCGGTTGGGACTATTGCGTATATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGTCAGTACAATGGTTATGCAGGGGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTTGGTCGCTTTCCTCTTGCTGTTGAGAGGCCTGGGGATTGGGCTAGCTTGATGTGTGCTATATGTATGGCTCAGCCACCGGAGGCCCCGGCCACTGCTTCACCGGAGTTTCGCCACTTTATTGCTTGTTGTTTGCAAAGAGAAGCTCGGAAGAGATGGACTGCCGCTGCATTACTGGAGCATGCGTTCATAACAAGGAAAAATGGAGCGAGTCAGTACCAGAACAAGCAAGCTCATCATCAGAATCTTCGTCAACTATTACCTCCTCCGCCTCTTCATCCTCCCAGCCTTTCTTGA 1107 49.41 MRPFQPPPATNPPTDRTRRRPHLNLHLPQRDNTSLAVPLPLPPTSSNSAPPPSTSQLHNANRPPDPLPPQRQPFTLSDFERVSRIGSGCGGTVYKVLHRPTGHVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHQLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPATASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGASQYQNKQAHHQNLRQLLPPPPLHPPSLS* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8666146 8667252 + Chy4G074300.1 Chy04g00712 224611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00712 368 Pfam Protein kinase domain 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00712 368 Gene3D Phosphorylase Kinase; domain 1 67 158 - -
Chy04g00712 368 ProSiteProfiles Protein kinase domain profile. 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00712 368 SUPERFAMILY Protein kinase-like (PK-like) 55 353 IPR011009 -
Chy04g00712 368 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 15 354 - -
Chy04g00712 368 SMART serkin_6 79 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00712 368 CDD PKc_MAPKK_plant_like 77 335 - -
Chy04g00712 368 Gene3D Transferase(Phosphotransferase) domain 1 160 357 - -
Chy04g00712 368 MobiDBLite consensus disorder prediction 1 74 - -
Chy04g00712 368 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Chy04g00712 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Chy04g00712 368 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 15 354 - -
Chy04g00712 368 MobiDBLite consensus disorder prediction 340 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00712 K13413 MKK4_5; mitogen-activated protein kinase kinase 4/5 [EC:2.7.12.2] - csv:101219669 679.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00712 Chy-Chr4:8666146 Chy12g01379 Chy-Chr12:17994198 8.14E-98 dispersed
Chy04g00712 Chy-Chr4:8666146 Chy05g01452 Chy-Chr5:18365650 8.39E-67 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g01452 CCT 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.3 2.1e-125 445.7
Chy02g01249 CCT 28 309 MAP Kinase Kinase Gene Family AT4G26070 70.9 3.1e-116 415.2
Chy05g01408 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 55.4 3.8e-106 381.7
Chy02g01249 CCT 1 309 MAP Kinase Kinase Gene Family AT4G29810 70.4 1.5e-126 449.5
Chy05g01452 CCT 3 325 MAP Kinase Kinase Gene Family AT4G29810 63.2 1.1e-118 423.3
Chy05g01408 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 2.1e-109 392.5
Chy04g01430 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 78.9 4.1e-226 780.8
Chy04g00712 . 1 360 MAP Kinase Kinase Gene Family AT1G51660 69.5 2.2e-136 482.3
Chy12g01379 . 49 316 MAP Kinase Kinase Gene Family AT1G51660 55.6 1.3e-83 307.0
Chy04g00712 . 1 360 MAP Kinase Kinase Gene Family AT3G21220 63.7 2.1e-128 455.7
Chy12g01379 . 47 314 MAP Kinase Kinase Gene Family AT3G21220 54.5 3.2e-84 308.9
Chy05g01408 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 83.7 8.1e-168 586.6
Chy05g01452 CCT 1 340 MAP Kinase Kinase Gene Family AT5G56580 55.6 1.5e-108 389.8
Chy02g01249 CCT 7 345 MAP Kinase Kinase Gene Family AT5G56580 55.0 9.8e-105 377.1
Chy12g01379 . 1 316 MAP Kinase Kinase Gene Family AT1G18350 63.6 1.8e-107 386.0
Chy12g01379 . 1 300 MAP Kinase Kinase Gene Family AT3G06230 51.3 1.1e-80 297.0
Chy12g01379 . 1 312 MAP Kinase Kinase Gene Family AT1G73500 65.7 3.8e-113 404.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71189 PF00069 Pkinase 6.90E-60 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00712 Chy_Chr04 FPKM 323.125916 317.191071 51.463867 53.028118 65.264977 69.194946 68.455345 52.433998 55.217258 52.41011