Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00723 ATGTCAAAACCCGACGACACCCCCACCGCCGGAGTTCCATTCTCCGGCTACTCAAAAACCAACCTCTTGGTCTTCGCCCTCTCAACAACGCTTCTCCTCGCAGCCGTCTCCTCCGACGACCACGTGAGAAGCAAGTGCGCCATGACGCTCTACCCCGAGCTTTGCGAGACGACGATATCTACCGCCGTGGGAAGTAGTTCAAAAGAGGCAATCGAAGCGTCGGTGAACATTACGATTAGTGCAGTGAAGGATAATTATGAAAGGGTGAAGAAATTGCTTAAGACAGTGAAGAATCTGACGAAACGACAGAAGATTGCATTTCATGACTGTTTGGAAACAGGGGAAGAGACGCTGAGAGAGCTTTATGAAGTTGTTGAAGATGTTAATGAGTATCCTAATAAAAAATCTCTCTCACGCTACGCTGATGACCTCAAAACTTTACTCAGCTCCGCCATTACTAATCAGGAGACATGCGTGGACGGATTCTCACACGACAAAGGCGATAAAAAAGTACGAGAGTCATTAAAAGAAGGCCTTATTCACATTGAAATGCTTAGCAGCATTGCTTTAGCCTTGATTAAGAACCTTACCGACACCGACATTGCCAATCTCAACAACAATAATAACCACCTCAACCGAAAGCAACTGGAAGAAAAGAAGATGGACGATGGAATTAACTGGCCAGATTGGATGTCACCCAAGGATCGAAGGCTTTTGCAAGCCTCGTCTACAGCCACTCCCGACGTGGTAGTAGCAGCCGACGGGAGCGGGGATTTTCGGACAATTTCTGAGGCAGTTGCGGCGGCGCCTAGTAAAAGTAGCCGGAGGTATATAATAAGAATAAAGGCAGGTGTTTATAGAGAAAATGTGAATGTGGCAAGTAGTAAGAGGAATATAATGTTTTGGGGAGATGGAAGGGTTAACACTATAATCACCGGGAATAGAAATGTGGTCGATGGCAGCACTACCTTCAACTCCGCCACCGTTGCGGCGGTAGGAGAAAGGTTCTTGGCGAGAGACGTTACATTTCAGAACACCGCCGGTCCATCAAAGCACCAAGCGGTGGCTCTCCGAGTTGGCTCCGACCTCTCTGCTTTTTACCGCTGCGACATGCTCGCCTATCAAGACACACTCTACGTCCATTCCAACCGTCAATTCTACGTCCAGTGCATCATCGTCGGCACCATCGACTTCATCTTCGGCAATGCCGCCGCCGTCATCCAAGACTGTGACATCCACGCCCGCCGCCCCAATCCCGGCCAGAGGAACATGGTCACTGCACAAGGAAGAACAGACCCAAATCAAAACACTGGGATTGTCATCCAGAAATGCCGAATCGGAACCACCTCCAATTTGCGGCCAGTGATCAGCAATTTCCCGACGTTTCTGGGGCGGCCGTGGCAGAGATACTCGAGAACGGTGATTATGCAGACGAGTATTAGCAATGTGATTGATCCGGCGGGGTGGCATGTTTGGGATGGGAATTTTGCGCTTGATACTCTGTTTTATGCCGAGTATCAGAATAGTGGTGCCGGTGCCGATACGTCGAGGAGAGTGAGGTGGAAGGGGTTTAGGGTTCTTACAAGAGCGGCGGAAGCGGAGGCCTTTACGGCGGGGAATTTCATCGGCGGCGGCACCTGGCTGAGCTCCACAGGATTCCCATTTTCACTTGGGTTGTAA 1680 49.94 MSKPDDTPTAGVPFSGYSKTNLLVFALSTTLLLAAVSSDDHVRSKCAMTLYPELCETTISTAVGSSSKEAIEASVNITISAVKDNYERVKKLLKTVKNLTKRQKIAFHDCLETGEETLRELYEVVEDVNEYPNKKSLSRYADDLKTLLSSAITNQETCVDGFSHDKGDKKVRESLKEGLIHIEMLSSIALALIKNLTDTDIANLNNNNNHLNRKQLEEKKMDDGINWPDWMSPKDRRLLQASSTATPDVVVAADGSGDFRTISEAVAAAPSKSSRRYIIRIKAGVYRENVNVASSKRNIMFWGDGRVNTIITGNRNVVDGSTTFNSATVAAVGERFLARDVTFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYVQCIIVGTIDFIFGNAAAVIQDCDIHARRPNPGQRNMVTAQGRTDPNQNTGIVIQKCRIGTTSNLRPVISNFPTFLGRPWQRYSRTVIMQTSISNVIDPAGWHVWDGNFALDTLFYAEYQNSGAGADTSRRVRWKGFRVLTRAAEAEAFTAGNFIGGGTWLSSTGFPFSLGL* 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8881204 8885882 + Chy4G074410.1 Chy04g00723 224622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00723 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 198 IPR035513 -
Chy04g00723 559 ProSitePatterns Pectinesterase signature 1. 273 292 IPR018040 -
Chy04g00723 559 Pfam Plant invertase/pectin methylesterase inhibitor 42 192 IPR006501 GO:0004857
Chy04g00723 559 Pfam Pectinesterase 248 544 IPR000070 GO:0030599|GO:0042545
Chy04g00723 559 PANTHER PECTINESTERASE 38 558 - -
Chy04g00723 559 SMART PMEI_2 37 192 IPR006501 GO:0004857
Chy04g00723 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 197 IPR035513 -
Chy04g00723 559 TIGRFAM PME_inhib: pectinesterase inhibitor domain 21 197 IPR006501 GO:0004857
Chy04g00723 559 Coils Coil 201 221 - -
Chy04g00723 559 Gene3D - 242 559 IPR012334 -
Chy04g00723 559 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Chy04g00723 559 PANTHER PECTINESTERASE 38 558 - -
Chy04g00723 559 CDD PMEI-like_3 46 197 - -
Chy04g00723 559 SUPERFAMILY Pectin lyase-like 242 558 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01396 Chy-Chr1:18951154 Chy04g00723 Chy-Chr4:8881204 0 dispersed
Chy01g01398 Chy-Chr1:18997971 Chy04g00723 Chy-Chr4:8881204 0 dispersed
Chy04g00723 Chy-Chr4:8881204 Chy09g01018 Chy-Chr9:12752095 4.72E-153 dispersed
Chy01g02125 Chy-Chr1:25934718 Chy04g00723 Chy-Chr4:8881204 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00723 K01051 - csv:101207996 1042.72