Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00725 ATGGATACTGTCAAGTCCTTCAAGGGCTACGGCAAGGTCGACGAACTCGAGCAACAAGCTTTCCGACAAAAGACTCGCCGTCGCCTTATTATTATCTTTATTTCCGTTGTTCTTCTAATTGCCCTCCTCGTCGGCGCCGTCGTTGGAATCGTCGTTCATAAACGCAACTCTTCTTCTTCATCCACCACCACCTCACCTCCTCCCACTGAGCTCACTCCCCCTGCCTCACTCAAAACTCTCTGTAGTGTCACTCAGTATCCCAGTTCCTGTCAATCCTCTCTCCAAAACTCCAATACCACCGATCCGGTATTTCTCTTCAAGCTTTCTCTCCGAGTCGCCACTGATTCACTCTCGAAGCTCTCTGATTATACGTCTAATTTCAATTCCACTACTGGAGATCCCAAGGTTGAAGCTGCAATTAAAATTTGCCGGAGTGTTTTTGAAGATGCCATTGATACGTTAAACGATACCGTTTCGTCTATGGAAGTGGATCGTCATAGTGAGAAGTTCTTGTCGCCTTCTAGGATTGAAGATCTGAAAACCTGGCTGAGTACTACAATCACAGATCAAGAAACCTGCCTTGACGCTCTTCGAGATCTAAACCAGACGACGGTTCTTCAGGACTTGCAAACGGCAATGGTGAACTCTACCGAGTTTACTAGCAATAGTTTAGCGATTGTAACCAAAATACTTGGGTTGTTGGCCGATTTCAACATCCCTATCCACCGGAAATTGATGGGATTACCGGAGTGGGTAAGCTCTGGCGACCGAAGGCTTCTGGAGGAGAACAATGTGACGGCGCATGTGACGGTATCGAAGGATGGGAAAGGGAAATACACGACAATCCAAGATGCCGTAGCGGCGGTGCCAAAGAAGAGCAAAGAAAGATTCATCATACATGTAAAAGAAGGAATATACGAAGAGAATGTGATTCTGGACAAGAGCAAGTGGAATGTTATGATGTATGGAGATGGCAGAACAAAAACCATTGTTTCCGGCCACCTGAACTTCATCGACGGCACTCCCACCTTCTCCACCGCCACTTTTGCTGTTGCTGGCAAAGGGTTCATTGGGAAGGACATGGGGTTCATCAACACGGCCGGTCCAGCCAAGCACCAGGCCGTTGCCTTCCGGTCGGGCTCCGACCTCTCTGTGATGTCTGGATGTTCATTTGATGGCTATCAAGACACTCTCTACGCCCACTCAAACCGTCAATTTTACCGGGACTGCGATATCACCGGCACCATCGACTTCATCTTCGGCAACGCCGCGGTGGTGTTCCAGAACTGCAACATACGGCCGAGGCAGCCACTTCCCAACCAATTTAACACCATCACAGCCCAAGGTAAGAAGGACATCAATCAAAATTCCGGCATTTCGATTCAGAAATGCACTTTTTCGGCCTACAATGACAGTCTCAACGCCCCCACTTATTTGGGGCGGCCATGGAAGGAGTTTTCTACGACGGTGATTATGCAGTCGGAAATCGGAGGATTCCTGAATCCGGTTGGGTGGAAGGAATGGGTGAGCGGGCAGGACCCACCCAGCAGCATATTTTATGGGGAGTATCAGAATAGTGGGCCAGGATCAAACGTGGACAAGAGGGTTAGATGGGCCGGTTACAAGCCCAGTCTTACGGATTCCGAGGCCGGAAGGTTCACCGTTGGGACCTTCCTGAACGGCGAGGATTGGTTGCCGGCTACCAATGTAAACTTTGATACATCTCTGTAA 1731 49.16 MDTVKSFKGYGKVDELEQQAFRQKTRRRLIIIFISVVLLIALLVGAVVGIVVHKRNSSSSSTTTSPPPTELTPPASLKTLCSVTQYPSSCQSSLQNSNTTDPVFLFKLSLRVATDSLSKLSDYTSNFNSTTGDPKVEAAIKICRSVFEDAIDTLNDTVSSMEVDRHSEKFLSPSRIEDLKTWLSTTITDQETCLDALRDLNQTTVLQDLQTAMVNSTEFTSNSLAIVTKILGLLADFNIPIHRKLMGLPEWVSSGDRRLLEENNVTAHVTVSKDGKGKYTTIQDAVAAVPKKSKERFIIHVKEGIYEENVILDKSKWNVMMYGDGRTKTIVSGHLNFIDGTPTFSTATFAVAGKGFIGKDMGFINTAGPAKHQAVAFRSGSDLSVMSGCSFDGYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIRPRQPLPNQFNTITAQGKKDINQNSGISIQKCTFSAYNDSLNAPTYLGRPWKEFSTTVIMQSEIGGFLNPVGWKEWVSGQDPPSSIFYGEYQNSGPGSNVDKRVRWAGYKPSLTDSEAGRFTVGTFLNGEDWLPATNVNFDTSL* 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8913355 8915596 + Chy4G074430.1 Chy04g00725 224624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00725 576 PANTHER PECTINESTERASE 1-RELATED 8 573 - -
Chy04g00725 576 SUPERFAMILY Pectin lyase-like 266 573 IPR011050 -
Chy04g00725 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 62 230 IPR006501 GO:0004857
Chy04g00725 576 CDD PMEI-like_3 79 230 - -
Chy04g00725 576 SMART PMEI_2 72 226 IPR006501 GO:0004857
Chy04g00725 576 Pfam Pectinesterase 268 561 IPR000070 GO:0030599|GO:0042545
Chy04g00725 576 Gene3D - 262 576 IPR012334 -
Chy04g00725 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 230 IPR035513 -
Chy04g00725 576 Pfam Plant invertase/pectin methylesterase inhibitor 77 226 IPR006501 GO:0004857
Chy04g00725 576 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Chy04g00725 576 PANTHER PECTINESTERASE 8 573 - -
Chy04g00725 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 231 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00725 Chy-Chr4:8913355 Chy12g00390 Chy-Chr12:4598161 5.61E-159 dispersed
Chy12g01557 Chy-Chr12:19178095 Chy04g00725 Chy-Chr4:8913355 1.24E-35 dispersed
Chy04g00725 Chy-Chr4:8913355 Chy08g01044 Chy-Chr8:17539007 2.35E-139 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00725 - - csv:101207508 1097.42