Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00729 ATGCTTCATTCAGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAATGTACCTAAAGTAAAATTTGAGGAGGAAGTTGATGAGGATAAGTTGAAATATCCGTTTCCTGAGTTAGTTTCTTCCGGACGATTGGAGGTTCGGGTTTTGGCAAATCCAAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTGCCGAGCTTTGTCTACTTGCAAGGGGAACAACTTGGAAATGATGAAATTGGGTCCTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATACTCCACTACCAACCTTTGTGTATTTAGAAATCCCAAATGGAGGCAGAATTGCTGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATATATTGGAACAGCACATTTTCATGTTATGCCGCAGCTCATTTTCGTAGTGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCGCGCGCTGCTTTTAGGCTTTATTCTGTGGGGAGCAATTATGGTCTGCCTGGGATTGCTGATGACAGTACAATGAGTGATCTAGAGCCACAGCTTATTGGGGAACCCCTAAAGATTGACGTAGAACTACCTGAGTTAGATGTAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAGCCCTCCCAGCCATAAATATTCATGATAATAATGTGACCATGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATACCTGCTTATTGAGATCATTGGAAGATGGACTTAATTCACTTTTAAAGATTGAAATACGTGGTAGTAAACTTCAGGGAAAGTTCAGTTCTCCTCCACCACCTCTTCAAGCGGGATCTTTTTCTCGTGGAGTTGTGACAATGCGATGTGATATAGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGTGCTCATACTTGTTTCGATGATCAGCTCCTGGAGAAACATATCAAACACGAAATCATAGAAAATAACCAATTAGTTCATGCGATACATGATTGTGAAGGCAACAAGCATCACATGCACAAGCCTCGTAAGTCTGCTTCAATTGCATGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTTTTGAGGCAACTTGCACCTGATATCTCGTACCGGAGTTTAGTTGCACTTGGCATTGGGGGAGTTCAGGGTTTACCTGTTGCTTCTTTTGAGAAAGAGGATGCTGAGCGACTGCTCTTCTTTTGCTCAGGGGATGGGAATGATAAACATTCAGAGCAGTTGCTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCTAATAGAATGAGAGTAGAACCAAGCCAAGGAATAAGGAATAGTCTTTCACATGACAGTCTTTCATATGCAAACATCCCTGCCATTAGAAGAGTAGGTAGAGAGGACCCTGTACCAATGAATGGTTTCAAGGCATCCTTACACCCAGCGAGGAAAAAATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGGTTGCATAGGAATAAAATGACACCTTTTGCTGGATTGACTGAAGTAGATGGGAACAATGGAGGCTTATCCAAGGCTAGTTTATCCGTTGTTACCCCGCCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACACAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTAAACCCACTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCAGAGGAGGAGTTCTTGAAAGATGTTATGGAGTTTTTACTACTTAGAGGACATACACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCCATACTCAATGGAAAGCGTCTTGACCTCTATAACTTGTATAAAGAGGTGGTCACCCGAGGAGGCTTTCACGTGGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTATACAATGACCAATAGAATGACTGGTGTTGGAAATACACTAAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGTCTTTTGTGCCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTTGGGTGTGATCGAAGGCAGGGCCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGTATTACAACTTACAAGAAGAAACCACACCGAGTAGCAAATGGGTCTCCGCAAGGAATAACAAATCCACGGATACCTTGA 2355 42.68 MLHSVVAARQTCSLLAVTCGNVPKVKFEEEVDEDKLKYPFPELVSSGRLEVRVLANPSKDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLSLEDLCGLFNTPLPTFVYLEIPNGGRIAEALHSKGIPYLIYWNSTFSCYAAAHFRSALLSVVQSSSTHTWDAFQLARAAFRLYSVGSNYGLPGIADDSTMSDLEPQLIGEPLKIDVELPELDVGEGEDEDGSLEALPAINIHDNNVTMRFLICGVPCTPDTCLLRSLEDGLNSLLKIEIRGSKLQGKFSSPPPPLQAGSFSRGVVTMRCDIVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENNQLVHAIHDCEGNKHHMHKPRKSASIACGATVFEVSMKVPAWASQVLRQLAPDISYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDGNDKHSEQLLVSVLPSWFKPPTPNRMRVEPSQGIRNSLSHDSLSYANIPAIRRVGREDPVPMNGFKASLHPARKKLKVASMRPVPRLHRNKMTPFAGLTEVDGNNGGLSKASLSVVTPPKHVTVGSTSATHRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHTRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVANGSPQGITNPRIP* 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8992828 8997935 + Chy4G074470.1 Chy04g00729 224628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00729 784 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677
Chy04g00729 784 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Chy04g00729 784 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Chy04g00729 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 767 IPR013083 -
Chy04g00729 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 773 IPR042293 -
Chy04g00729 784 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677
Chy04g00729 784 CDD ARID 599 697 - -
Chy04g00729 784 CDD PHD_ARID4_like 707 758 - -
Chy04g00729 784 Gene3D - 594 697 IPR036431 GO:0003677
Chy04g00729 784 SMART ARID_2 594 697 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00729 - - - csv:101215769 1539.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00729 Chy-Chr4:8992828 Chy11g01890 Chy-Chr11:25100017 5.45E-06 dispersed
Chy01g02133 Chy-Chr1:25987979 Chy04g00729 Chy-Chr4:8992828 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy05g00556 . 82 447 ARID Transcription Factor Family AT1G04880 56.2 7.2e-105 377.9
Chy06g02296 . 483 753 ARID Transcription Factor Family AT1G20910 61.4 5.2e-91 331.6
Chy07g00366 . 23 195 ARID Transcription Factor Family AT1G76110 65.0 3.5e-59 225.7
Chy06g02296 . 462 783 ARID Transcription Factor Family AT1G76510 60.2 4.7e-109 391.7
Chy04g00729 . 1 773 ARID Transcription Factor Family AT3G43240 59.4 1.8e-265 912.1
Chy01g02133 . 2 771 ARID Transcription Factor Family AT3G43240 57.6 2.5e-259 891.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17835 PF01388 ARID 5.70E-14 CL0123 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00729 Chy_Chr04 FPKM 172.321625 185.035126 170.944305 177.713028 215.46138 209.095352 212.854767 180.862518 184.077164 181.097305