Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00729 ATGCTTCATTCAGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAATGTACCTAAAGTAAAATTTGAGGAGGAAGTTGATGAGGATAAGTTGAAATATCCGTTTCCTGAGTTAGTTTCTTCCGGACGATTGGAGGTTCGGGTTTTGGCAAATCCAAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTGCCGAGCTTTGTCTACTTGCAAGGGGAACAACTTGGAAATGATGAAATTGGGTCCTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATACTCCACTACCAACCTTTGTGTATTTAGAAATCCCAAATGGAGGCAGAATTGCTGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATATATTGGAACAGCACATTTTCATGTTATGCCGCAGCTCATTTTCGTAGTGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCGCGCGCTGCTTTTAGGCTTTATTCTGTGGGGAGCAATTATGGTCTGCCTGGGATTGCTGATGACAGTACAATGAGTGATCTAGAGCCACAGCTTATTGGGGAACCCCTAAAGATTGACGTAGAACTACCTGAGTTAGATGTAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAGCCCTCCCAGCCATAAATATTCATGATAATAATGTGACCATGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATACCTGCTTATTGAGATCATTGGAAGATGGACTTAATTCACTTTTAAAGATTGAAATACGTGGTAGTAAACTTCAGGGAAAGTTCAGTTCTCCTCCACCACCTCTTCAAGCGGGATCTTTTTCTCGTGGAGTTGTGACAATGCGATGTGATATAGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGTGCTCATACTTGTTTCGATGATCAGCTCCTGGAGAAACATATCAAACACGAAATCATAGAAAATAACCAATTAGTTCATGCGATACATGATTGTGAAGGCAACAAGCATCACATGCACAAGCCTCGTAAGTCTGCTTCAATTGCATGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTTTTGAGGCAACTTGCACCTGATATCTCGTACCGGAGTTTAGTTGCACTTGGCATTGGGGGAGTTCAGGGTTTACCTGTTGCTTCTTTTGAGAAAGAGGATGCTGAGCGACTGCTCTTCTTTTGCTCAGGGGATGGGAATGATAAACATTCAGAGCAGTTGCTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCTAATAGAATGAGAGTAGAACCAAGCCAAGGAATAAGGAATAGTCTTTCACATGACAGTCTTTCATATGCAAACATCCCTGCCATTAGAAGAGTAGGTAGAGAGGACCCTGTACCAATGAATGGTTTCAAGGCATCCTTACACCCAGCGAGGAAAAAATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGGTTGCATAGGAATAAAATGACACCTTTTGCTGGATTGACTGAAGTAGATGGGAACAATGGAGGCTTATCCAAGGCTAGTTTATCCGTTGTTACCCCGCCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACACAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTAAACCCACTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCAGAGGAGGAGTTCTTGAAAGATGTTATGGAGTTTTTACTACTTAGAGGACATACACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCCATACTCAATGGAAAGCGTCTTGACCTCTATAACTTGTATAAAGAGGTGGTCACCCGAGGAGGCTTTCACGTGGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTATACAATGACCAATAGAATGACTGGTGTTGGAAATACACTAAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGTCTTTTGTGCCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGTATTTGTGGTGAATGGGCTCATTTTGGGTGTGATCGAAGGCAGGGCCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGTATTACAACTTACAAGAAGAAACCACACCGAGTAGCAAATGGGTCTCCGCAAGGAATAACAAATCCACGGATACCTTGA 2355 42.68 MLHSVVAARQTCSLLAVTCGNVPKVKFEEEVDEDKLKYPFPELVSSGRLEVRVLANPSKDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLSLEDLCGLFNTPLPTFVYLEIPNGGRIAEALHSKGIPYLIYWNSTFSCYAAAHFRSALLSVVQSSSTHTWDAFQLARAAFRLYSVGSNYGLPGIADDSTMSDLEPQLIGEPLKIDVELPELDVGEGEDEDGSLEALPAINIHDNNVTMRFLICGVPCTPDTCLLRSLEDGLNSLLKIEIRGSKLQGKFSSPPPPLQAGSFSRGVVTMRCDIVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENNQLVHAIHDCEGNKHHMHKPRKSASIACGATVFEVSMKVPAWASQVLRQLAPDISYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDGNDKHSEQLLVSVLPSWFKPPTPNRMRVEPSQGIRNSLSHDSLSYANIPAIRRVGREDPVPMNGFKASLHPARKKLKVASMRPVPRLHRNKMTPFAGLTEVDGNNGGLSKASLSVVTPPKHVTVGSTSATHRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHTRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVANGSPQGITNPRIP* 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8992828 8997935 + Chy4G074470.1 Chy04g00729 224628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00729 784 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677
Chy04g00729 784 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Chy04g00729 784 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Chy04g00729 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 767 IPR013083 -
Chy04g00729 784 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 773 IPR042293 -
Chy04g00729 784 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677
Chy04g00729 784 CDD ARID 599 697 - -
Chy04g00729 784 CDD PHD_ARID4_like 707 758 - -
Chy04g00729 784 Gene3D - 594 697 IPR036431 GO:0003677
Chy04g00729 784 SMART ARID_2 594 697 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00729 Chy-Chr4:8992828 Chy11g01890 Chy-Chr11:25100017 5.45E-06 dispersed
Chy01g02133 Chy-Chr1:25987979 Chy04g00729 Chy-Chr4:8992828 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17835 PF01388 ARID 5.70E-14 CL0123 Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00729 - - csv:101215769 1539.63