Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00760 ATGTCTCGAAGATCGACTAGGTTATTGGATAAGGCGAATAAACATTTTGAGAAAATCACAAGTAGTGTAACTACAAAATCATCTAGAAGTAACAGATATGTTGTATCTGAGGGAATCCTTAAAGCACATAGAAGGAGTCAAAAGTGGACACCAAATAATGAGGTTAAGCTAAATGAAGTTATGTTGTCTCCATCTTTTGAGCAATTAGAGGGAAACAAGAGAAAGACATACAATAAGAGGTCAATGGTCAAAAGAGCAACTGCTTCGAAGAATCTTAAGTCGGAGGAGGGTATCAACAAAAAAGGGAGTGGGAGATTAAGGAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGACGATGTTTATGTAAGGAGGAGAGAAGATGCAAGCTCTGATGATGAAGATCCTGAAGTTGAGGAGTGTAGAATGTGCTTTAAATCTGGAAATGCAATAATGATCGAGTGTGATGACTGTCTTGGTGGTTTTCATTTGAAGTGTTTGAAGCCTCCAATGAAGGTGATCCCTGAGGGGGATTGGATTTGTGGGTTTTGTGAGTCTGCCAAAATGGGCAAAGAGGTTCAATTGCCAAAGCCTCCGGAGGGTAAAAAACGGGTTAGGACAATGAGGGAGAAGCTTCTAGCAGGCGTTTTGTGGGCTGCTCATATTGAAAGTATATGGAAAGAAGTAACGGGTAACCATCACTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACTGCAGCTGGAAGGCAACCGCATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTTTGCAGATATTGAGATGGAATCGCTTCTTAGACTGTGTGAAGTCAAGAATCCGAAAGACTATTATAAAGCCAAGGAAGGGGATGATATATTTTTATGTGAGTATGAATATGACGTTCGTTGGCATAGTTTCAAGAGGTTGGCTGAAATTGATAAAGAACAGGATAGTGAAGCAGTTGATAGTGACACAGAGTGGAAGTTGGACCAGAATGTAGACTCTGATTCAGATGGTGACGTGGAATATGAAGAAGAGAGAGCACAAATTTTACTATCTCGAAACTACTCAAGCTCAACCCATGAATTAGCTGCAAATTCAAGGAAAGGACAATTTTGTGGACTACAAAAGATAGGAGCTAAGAAGATCCCAGAGCATACAAGATGTCATAAACAAACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCACTACCCAAGTCCCTACCGTGTAGAAATAAAGAAATTGAGGAGATAACTACGTTTATTGAAAGTGCTTTATGTGATGATCAATGCTTGGGTCGATGCTTGTACATCTATGGTGTTCCAGGAACAGGTAAGACCATGAGTGTGCTGTCGGTAATGAGAAACTTGCGGGCTAAAGTTGATACAGGAAATCTAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCAGCACCAGAAAATATATACAGAGTTATACATGAAGCATTAACTGGGCATAGGGTTAATTGGAAAAAGGCGCTTCAGTTGTTGACCAAACGTTTTTCAGACGTAAATAGTTACAGGGATGATGAGCGACCTTGCATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAATTCTATACAACATTCTCGATTGGCCTACAAAGCCACAAGCCAAGTTGATTGTGATAGGAATTGCAAATACCATGGACCTACCAGAGAAGTTGCTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCCTATAACTATCAGCAACTTCAAGAAATTATTTTGAGCCGGCTTGAAGGAATCAATGCATTTGAGAAACAAGCTATTGAATTTGCATCGAGAAAGGTAGCTGCTATTTCAGGAGATGCACGTCGTGCTTTGGAGATATGTAGGCGTGCAGCTGAAATTACGGATTATCATTTAAAGAAGCATCATATGAAGCAGCTGAGTTTGATTTCCAACACTGCGAAAACACATGTTGGAATAGCTGAGGTGGAAACAGCGATCCAAGAAATGTTTCAAGCACCTCATATGCAAGTGATGAAGAGTTGTTCTAAGCAGAGCAAGATCTTCTTGACAGCGATGGTGCATGACTATTATAAAACAGGGTTGGGTGAAGAAACCTTTGAAAAGCTTGCCATGACTGTCTCAAATCTTTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCTCTCCTGAAAGTTGGCTGTAGGCTTGGTGAGTGCAGAATTATTTTATGTGAATCAGGGGCTAAACACCGGTTGCAAAAGTTACAGCTTAATGTTCCAAGTGATGACGTCTCATTTGCATTGAAAGATAGTAAGGATATACCTTGGTTGGCTAAGACTGCAGTTGAGAGTTTTGATGTGTTTGTACGTGCTGGGGGAATGAACAGGGCATATCATGTGGATTTCCTTGAACCAATTTCAACTAGGCCCGGATACGGCTGCAGGTGCTCCAGGAACGAATGCTCTCTTGAATGGTTTGGAAATCTAATCCGGAGAAGGAATTTTACAAAGAACTTTTCTGGGTGGAGAGGAGGTTCTAGTCATGAGGCCACTGTCACCAACACTTACGCCAGAGGGTCTGTGGGGGGAGGCCAAAGTGTGTTCGGGACCTTGCCATCTATCAGAGTTGGCAAATGGTTTACATTAGCAGATATTCTTGCAGCGACAGATAACTTTGATGAAGCTCTGATGATTGGAGTTGGGGGTTTTGGTAAGGTCTACAGAGGGGAGATTGATGATGGTACTCTTGTGGCAATCAAGAGAATAAAGCCCCAGTCTCAGCAGGTACTTGCTGAGTTCGAAACTGAGATCGAAATGCTTTCTAAACTTAGGCATAGACATCTGGTGTCAATGATCGGCTTTTGCGACGAGCAAAGGGAAATGATCTTGGTTTACGAATATCTGGCGAATGGCACCCTTAGAAGCCAGTCTTTGGTAAGATTGGAAGTTTGCATTGGTGCAGCCAGGGGACTCCATTATCTTCACACAGGAGCTGAGAGAGGAATAATCCACAGAGATGTGAAGACGACTAACATACTCTTGGATGAAAATTTTGTTGCAAAAATGTCTGATTTTGGTCTTTCAAAAACAGGTCCTTCTTTGGATCACACTCATGTTAGTACTGCAGTTAAGGGCAGCTTCGGCTACCTCAATCTGAAGTACTTCAGGCGTCAGCAGCTGAGTGAAAAATCTGATGTTTATTCTTTTGGTGTGGTATTGTTAGAAGTTGTTTGTGCAAGAGCTGTTATAAACCCAACTTTGCCTAAGGATCAGATAAATCTGGCAGAATGGGCAATGAAATGGCAACGAAAAAAGTTGTTGCACACCATCATAGATCCACATCTTAAAGACAAATATTGTCCCGAATCTCTAAAAACATTTGGAGAAATGGCAGAAAAATGCCTTGCTGGTGAAGGGAAGATTTGTCCAACAATGGGCGAAGTTCTATGGCACCTAGAATATTCTCTGCAACGCCATGATGCTTGGATCTGCACTAATGATGCACAAAGTTCTTGCGCAGTAAACTCAGAAGGAGCAGAAGCTGAGGAACAGAGGCTAGATCATGATGGGGAAGAGGAATGCTCCAACATGAAAGCTTCAACTCCAACTGATCACTCATCCTAA 3684 41.61 MSRRSTRLLDKANKHFEKITSSVTTKSSRSNRYVVSEGILKAHRRSQKWTPNNEVKLNEVMLSPSFEQLEGNKRKTYNKRSMVKRATASKNLKSEEGINKKGSGRLRKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDDEDPEVEECRMCFKSGNAIMIECDDCLGGFHLKCLKPPMKVIPEGDWICGFCESAKMGKEVQLPKPPEGKKRVRTMREKLLAGVLWAAHIESIWKEVTGNHHCKVRWYIIPEETAAGRQPHNLKRELYLTNDFADIEMESLLRLCEVKNPKDYYKAKEGDDIFLCEYEYDVRWHSFKRLAEIDKEQDSEAVDSDTEWKLDQNVDSDSDGDVEYEEERAQILLSRNYSSSTHELAANSRKGQFCGLQKIGAKKIPEHTRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQCLGRCLYIYGVPGTGKTMSVLSVMRNLRAKVDTGNLRPHCFVEVNGLKLAAPENIYRVIHEALTGHRVNWKKALQLLTKRFSDVNSYRDDERPCILLIDELDLLVTRNQSILYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIILSRLEGINAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYHLKKHHMKQLSLISNTAKTHVGIAEVETAIQEMFQAPHMQVMKSCSKQSKIFLTAMVHDYYKTGLGEETFEKLAMTVSNLCTSNGEEFPGYDALLKVGCRLGECRIILCESGAKHRLQKLQLNVPSDDVSFALKDSKDIPWLAKTAVESFDVFVRAGGMNRAYHVDFLEPISTRPGYGCRCSRNECSLEWFGNLIRRRNFTKNFSGWRGGSSHEATVTNTYARGSVGGGQSVFGTLPSIRVGKWFTLADILAATDNFDEALMIGVGGFGKVYRGEIDDGTLVAIKRIKPQSQQVLAEFETEIEMLSKLRHRHLVSMIGFCDEQREMILVYEYLANGTLRSQSLVRLEVCIGAARGLHYLHTGAERGIIHRDVKTTNILLDENFVAKMSDFGLSKTGPSLDHTHVSTAVKGSFGYLNLKYFRRQQLSEKSDVYSFGVVLLEVVCARAVINPTLPKDQINLAEWAMKWQRKKLLHTIIDPHLKDKYCPESLKTFGEMAEKCLAGEGKICPTMGEVLWHLEYSLQRHDAWICTNDAQSSCAVNSEGAEAEEQRLDHDGEEECSNMKASTPTDHSS* 1228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9669583 9674137 + Chy4G074780.1 Chy04g00760 224659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00760 1227 MobiDBLite consensus disorder prediction 1200 1215 - -
Chy04g00760 1227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 212 IPR013083 -
Chy04g00760 1227 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1022 1034 IPR008271 GO:0004672|GO:0006468
Chy04g00760 1227 ProSiteProfiles Zinc finger PHD-type profile. 145 194 IPR019787 -
Chy04g00760 1227 MobiDBLite consensus disorder prediction 329 349 - -
Chy04g00760 1227 Gene3D - 597 685 - -
Chy04g00760 1227 Gene3D - 400 596 IPR027417 -
Chy04g00760 1227 SMART serkin_6 912 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00760 1227 Pfam ATPase family associated with various cellular activities (AAA) 448 594 IPR003959 GO:0005524|GO:0016887
Chy04g00760 1227 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 93 797 - -
Chy04g00760 1227 Pfam PHD-finger 148 193 IPR019787 -
Chy04g00760 1227 Pfam BAH domain 228 316 IPR001025 GO:0003682
Chy04g00760 1227 MobiDBLite consensus disorder prediction 329 344 - -
Chy04g00760 1227 Pfam Protein tyrosine and serine/threonine kinase 917 1101 IPR001245 GO:0004672|GO:0006468
Chy04g00760 1227 SUPERFAMILY Protein kinase-like (PK-like) 891 1174 IPR011009 -
Chy04g00760 1227 Gene3D Phosphorylase Kinase; domain 1 892 985 - -
Chy04g00760 1227 Gene3D Transferase(Phosphotransferase) domain 1 986 1197 - -
Chy04g00760 1227 Gene3D - 87 334 IPR043151 -
Chy04g00760 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 656 IPR027417 -
Chy04g00760 1227 SMART PHD_3 147 192 IPR001965 -
Chy04g00760 1227 ProSiteProfiles BAH domain profile. 204 319 IPR001025 GO:0003682
Chy04g00760 1227 SMART AAA_5 444 597 IPR003593 -
Chy04g00760 1227 SMART BAH_4 179 319 IPR001025 GO:0003682
Chy04g00760 1227 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 93 797 IPR020793 -
Chy04g00760 1227 ProSiteProfiles Protein kinase domain profile. 912 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g00760 1227 MobiDBLite consensus disorder prediction 1195 1227 - -
Chy04g00760 1227 Pfam AAA lid domain 621 659 IPR041083 -
Chy04g00760 1227 SUPERFAMILY FYVE/PHD zinc finger 134 197 IPR011011 -
Chy04g00760 1227 ProSitePatterns Zinc finger PHD-type signature. 148 191 IPR019786 -
Chy04g00760 1227 ProSitePatterns Protein kinases ATP-binding region signature. 918 940 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00760 K02603 ORC1; origin recognition complex subunit 1 - csv:101214082 1573.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00078 Chy-Chr2:527025 Chy04g00760 Chy-Chr4:9669583 0 dispersed
Chy02g00079 Chy-Chr2:528214 Chy04g00760 Chy-Chr4:9669583 5.01E-71 dispersed
Chy02g00080 Chy-Chr2:528578 Chy04g00760 Chy-Chr4:9669583 6.83E-133 dispersed
Chy04g00760 Chy-Chr4:9669583 Chy10g00727 Chy-Chr10:13548017 2.45E-111 dispersed
Chy11g01344 Chy-Chr11:19699618 Chy04g00760 Chy-Chr4:9669583 5.58E-29 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G14700 66.0 1.6e-267 919.1
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G14700 69.2 8.0e-155 544.7
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G14700 64.4 3.8e-48 190.3
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G12620 67.9 7.0e-276 946.8
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G12620 69.5 2.3e-154 543.1
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G12620 66.7 9.8e-52 202.2
Chy03g01522 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.5 1.1e-140 496.5
Chy10g00355 . 9 413 Core DNA Replication Machinery Family AT2G01120 64.6 1.8e-153 539.3
Chy11g01648 . 3 524 Core DNA Replication Machinery Family AT4G29910 58.2 8.9e-169 590.5
Chy05g00660 . 1 254 Core DNA Replication Machinery Family AT1G26840 66.5 2.4e-90 328.9
Chy01g00870 . 34 829 Core DNA Replication Machinery Family AT1G79150 57.8 2.5e-244 842.0
Chy04g01347 . 10 939 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1347.0
Chy02g00156 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 1.1e-267 919.1
Chy01g00756 . 1 821 Core DNA Replication Machinery Family AT2G16440 76.8 0.0e+00 1120.9
Chy05g01255 . 1 717 Core DNA Replication Machinery Family AT2G07690 77.8 0.0e+00 1078.2
Chy02g00002 . 7 840 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1190.3
Chy01g01752 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1218.4
Chy11g01344 . 38 500 Core DNA Replication Machinery Family AT2G29680 60.9 1.2e-159 560.1
Chy11g01344 . 22 465 Core DNA Replication Machinery Family AT1G07270 58.2 1.5e-140 496.5
Chy01g01391 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.4 4.1e-257 884.0
Chy04g02091 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1085.5
Chy01g00231 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.8 2.7e-286 981.1
Chy11g00257 . 18 420 Core DNA Replication Machinery Family AT2G20980 55.8 8.0e-116 414.1
Chy06g01182 . 7 192 Core DNA Replication Machinery Family AT1G77320 66.7 3.6e-72 270.4
Chy01g02007 . 1 196 Core DNA Replication Machinery Family AT1G80190 66.5 3.6e-72 268.1
Chy07g00809 . 743 887 Core DNA Replication Machinery Family AT3G12530 71.7 1.8e-60 228.8
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT1G19080 67.6 1.1e-62 236.5
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT3G55490 67.6 1.1e-62 236.5
Chy06g00159 . 2 164 Core DNA Replication Machinery Family AT5G49010 61.3 3.1e-49 191.8
Chy11g00218 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1748.0
Chy12g01485 . 81 704 Core DNA Replication Machinery Family AT1G67630 61.7 4.3e-217 751.1
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy09g00091 . 7 469 Core DNA Replication Machinery Family AT5G41880 61.1 1.5e-166 582.8
Chy08g00986 . 1 1000 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1652.1
Chy04g01776 . 41 282 Core DNA Replication Machinery Family AT2G42120 78.9 1.6e-117 419.9
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy11g00894 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.3 0.0e+00 2984.5
Chy11g00894 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.8 0.0e+00 2949.5
Chy12g01602 . 1 258 Core DNA Replication Machinery Family AT5G22110 76.4 9.7e-119 424.1
Chy05g00194 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.5 1.3e-307 1052.4
Chy06g01971 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.7 6.0e-173 603.6
Chy08g00054 . 1 355 Core DNA Replication Machinery Family AT5G27740 84.8 8.6e-178 619.8
Chy07g00561 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 2.4e-153 538.5
Chy03g00774 . 6 220 Core DNA Replication Machinery Family AT1G77470 76.2 1.8e-93 339.7
Chy03g00775 . 1 216 Core DNA Replication Machinery Family AT1G77470 78.3 3.5e-89 325.5
Chy05g01462 . 26 618 Core DNA Replication Machinery Family AT2G06510 67.7 6.6e-250 860.1
Chy06g02198 . 28 701 Core DNA Replication Machinery Family AT2G06510 51.3 1.6e-200 696.0
Chy02g02440 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.6 3.7e-245 844.3
Chy06g02198 . 6 810 Core DNA Replication Machinery Family AT5G45400 53.1 9.1e-234 807.0
Chy02g02440 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 6.3e-240 827.0
Chy06g02198 . 1 796 Core DNA Replication Machinery Family AT4G19130 54.2 5.6e-230 794.3
Chy08g01078 . 1 373 Core DNA Replication Machinery Family AT5G26680 85.6 1.4e-182 636.0
Chy06g00300 . 1 1095 Core DNA Replication Machinery Family AT1G08840 52.9 2.9e-298 1021.5
Chy11g00843 . 2 759 Core DNA Replication Machinery Family AT1G08130 69.2 5.4e-297 1016.9
Chy11g00843 . 158 759 Core DNA Replication Machinery Family AT1G49250 69.3 4.9e-243 837.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002386 0 17 2 1 1 1 1 1 1 2 1 1 1 1 5 1 1 1 1 1 2 1 1 1 2 2 1 1 3 2 57
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17838 PF07714 PK_Tyr_Ser-Thr 1.70E-37 CL0016 Chy TR
71191 PF07714 PK_Tyr_Ser-Thr 1.70E-37 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g00760 Chy_Chr04 FPKM 35.009834 33.85907 20.356272 17.546719 25.127697 28.736721 25.235903 9.473 10.600573 9.594228