Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy04g00782 | ATGCAACTGGTACCAAATCATGGTGAGAATAAAGATGATATTCTGGAACGTGCGCCCATTTTAAGTCAATTGGATTTTCTGCCACAGTCTGTGGGGTCGTCATCCTCTGCTGAGATTGCTGAGATTATAGCTACAGGGAGAGAGAGCTCTGTTAGTGATGATGATTTACTCAATCTTAACATTGATGAAACTTGTCATCTGGTGAATGACCAACCACAATGTCGTATATGCCTTGACACTGGAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGCACTCAAAAGTATGTCCATAGATCTTGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTTGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATCATTGTTCAACTGATTGTGGCATTCTTGGGGGTGTTGGTGTATAAATTTTACGGAGAGGAACTAAGGGAAATGTTTGGCTATGAAGAACACCCATACGGGTTCTATGCCATGGCTGTCTTGGCTATCATCTTGGTTGGCTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTTCTCGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGTCATGTTATGGAGCTAAGGATGTTGGGCCTGTATTAA | 786 | 42.37 | MQLVPNHGENKDDILERAPILSQLDFLPQSVGSSSSAEIAEIIATGRESSVSDDDLLNLNIDETCHLVNDQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY* | 262 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 9990146 | 9991845 | - | Chy4G075000.1 | Chy04g00782 | 224681 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy04g00782 | 261 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 2 | 260 | - | - | |
| Chy04g00782 | 261 | SMART | ringv_2 | 73 | 122 | IPR011016 | GO:0008270 | |
| Chy04g00782 | 261 | PANTHER | OS02G0132300 PROTEIN | 2 | 260 | - | - | |
| Chy04g00782 | 261 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 126 | IPR013083 | - | |
| Chy04g00782 | 261 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 66 | 128 | IPR011016 | GO:0008270 | |
| Chy04g00782 | 261 | CDD | RING_CH-C4HC3_MARCH | 74 | 122 | - | - | |
| Chy04g00782 | 261 | Pfam | RING-variant domain | 74 | 121 | IPR011016 | GO:0008270 | |
| Chy04g00782 | 261 | SUPERFAMILY | RING/U-box | 70 | 125 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy02g01958 | Chy-Chr2:23225121 | Chy04g00782 | Chy-Chr4:9990146 | 2.66E-41 | dispersed | |
| Chy04g00782 | Chy-Chr4:9990146 | Chy06g01007 | Chy-Chr6:7616651 | 7.43E-07 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy04g00782 | - | - | csv:101221632 | 517.694 |