Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g00793 ATGAGCGTGATCGACCTTTTGACCAGAGTAGATGCGATCTGCCAGAAGTACGACAAATATGACATAGAAAAGCAGAGAGATCTCAATGTCTCCGGCGACGATGCCTTCGCTCGACTCTACGCCACTGTTGAAGCTGACATTGAAGCCGCTCTACAGAAAGCGGAGGATGCTTCTAAAGAGAAGAATAGGGCGTCCGTGGTGGCGTTGAATGCGGAGATTCGTCGTACGAAGGCTCGATTACTGGAGGATGTCCCCAAGTTGCAGAGGTTGGCTGTAAAGAGGGTTAAAGGGCTATCAACTGAAGATCTTACCACTCGAAATGATTTGGTACTTGCATTGCCGGATAGAATTCAAGCTATACCAGATGGAACTGTGACTACCACGAAAAATAATGGGGGCTGGACAACCTCAGCTTCACGGACAGAAATCAAATTTGACTCAGATGGGCGATTTGATGATGAGTACTTCCAACACACTGAGGAGTCCAGTCAGTTCAGACAGGAGTATGAAATGAGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTGGATACTCTAAAGAATATGGCACATGATATGAATGAGGAAATAGACAGGCAAGTCCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAACGTTAGATTAAAGGACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATCATTTTGTTGTGTATAATCTTGGGGATTGCTGCCTATCTATACAAGCCTGGATTAAGTCACTTTTTAGAATTGTTCGAGGAAGAGGCAATTGGAAAGACTAGAGAAGCCTGGATCTCTGGGTTCTTTAGGCAAGTGCAACTGAACTTTGTTATGGAATGTGGAAATAGTACTCTATCGTACAGAGTCGATCATGTTCAAACTTTGATGGACAAATCGATTAAGATGGTAGACCTTTTGGCTTCTCTCTACTACCCACCCATTATAGCCCGGCAGAAAATGGAGATGAGGAATAAGGATTGA 1038 43.93 MSVIDLLTRVDAICQKYDKYDIEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKEKNRASVVALNAEIRRTKARLLEDVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTVTTTKNNGGWTTSASRTEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYKPGLSHFLELFEEEAIGKTREAWISGFFRQVQLNFVMECGNSTLSYRVDHVQTLMDKSIKMVDLLASLYYPPIIARQKMEMRNKD* 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10202039 10205735 + Chy4G075110.1 Chy04g00793 224692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g00793 345 CDD SNARE_Qc 175 230 - -
Chy04g00793 345 Gene3D - 170 231 - -
Chy04g00793 345 SMART tSNARE_6 165 232 IPR000727 -
Chy04g00793 345 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Chy04g00793 345 PANTHER SYNTAXIN-73 1 261 - -
Chy04g00793 345 SUPERFAMILY SNARE fusion complex 163 230 - -
Chy04g00793 345 Coils Coil 219 239 - -
Chy04g00793 345 Coils Coil 40 60 - -
Chy04g00793 345 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Chy04g00793 345 Pfam SNARE domain 207 256 IPR000727 -
Chy04g00793 345 PANTHER SYNTAXIN 1 261 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00793 Chy-Chr4:10202039 Chy04g02075 Chy-Chr4:26217224 6.95E-172 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g00793 K08506 - csv:101219819 493.426